Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS12740

Experiment: Experiment:TE2, Cucumber 6 Petiole 1 (TE2-S-C6-P1)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Experiment:TE2, Cucumber 6 Petiole 1 (TE2-S-C6-P1)
2,423,216	-				+0.1
2,423,248	-				-0.5
2,423,297	+				-0.6
2,423,345	-				+0.3
2,423,611	+		LU632_RS12740	0.25	+2.6
2,423,618	-		LU632_RS12740	0.25	-1.5
2,423,650	-		LU632_RS12740	0.28	+0.9
2,423,650	-		LU632_RS12740	0.28	+0.6
2,423,689	+		LU632_RS12740	0.31	+1.7
2,423,691	+		LU632_RS12740	0.32	+2.0
2,423,816	-		LU632_RS12740	0.42	+1.0
2,423,862	-		LU632_RS12740	0.46	+0.1
2,423,924	-		LU632_RS12740	0.52	+1.3
2,423,928	-		LU632_RS12740	0.52	-0.9
2,423,928	-		LU632_RS12740	0.52	+1.7
2,423,928	-		LU632_RS12740	0.52	+3.7
2,423,928	-		LU632_RS12740	0.52	+2.8
2,423,928	-		LU632_RS12740	0.52	+0.7
2,423,928	-		LU632_RS12740	0.52	-0.6
2,423,961	+		LU632_RS12740	0.55	+1.2
2,424,024	+		LU632_RS12740	0.60	-0.2
2,424,025	-		LU632_RS12740	0.60	+1.4
2,424,044	+		LU632_RS12740	0.62	-0.5
2,424,045	-		LU632_RS12740	0.62	-0.7
2,424,079	+		LU632_RS12740	0.65	+0.3
2,424,079	+		LU632_RS12740	0.65	+1.7
2,424,088	-		LU632_RS12740	0.66	+1.3
2,424,120	+		LU632_RS12740	0.69	+1.6
2,424,139	+		LU632_RS12740	0.70	+1.4
2,424,139	+		LU632_RS12740	0.70	+1.6
2,424,140	-		LU632_RS12740	0.70	-1.4
2,424,187	+		LU632_RS12740	0.74	+0.2
2,424,265	+		LU632_RS12740	0.81	+1.7
2,424,269	+		LU632_RS12740	0.82	+1.4
2,424,269	+		LU632_RS12740	0.82	+0.7
2,424,269	+		LU632_RS12740	0.82	-0.2
2,424,270	-		LU632_RS12740	0.82	+2.1
2,424,270	-		LU632_RS12740	0.82	-1.9
2,424,270	-		LU632_RS12740	0.82	+1.4
2,424,270	-		LU632_RS12740	0.82	-0.9
2,424,270	-		LU632_RS12740	0.82	-0.7
2,424,333	+		LU632_RS12740	0.87	+0.8
2,424,343	+		LU632_RS12740	0.88	+2.2
2,424,344	-		LU632_RS12740	0.88	+1.4
2,424,426	-				-1.0
2,424,426	-				+0.7
2,424,426	-				-2.3
2,424,436	+				+0.1
2,424,471	+				+0.7
2,424,534	+				-0.9
2,424,535	-				-0.2
2,424,598	-				+0.5
2,424,669	-		LU632_RS12745	0.17	+6.1
2,424,687	-		LU632_RS12745	0.20	-0.3
2,424,725	+		LU632_RS12745	0.26	+0.4
2,424,799	-		LU632_RS12745	0.38	+0.1
2,424,892	+		LU632_RS12745	0.53	-0.1
2,424,892	+		LU632_RS12745	0.53	-1.9
2,424,893	-		LU632_RS12745	0.53	+0.4
2,424,893	-		LU632_RS12745	0.53	+2.5
2,424,893	-		LU632_RS12745	0.53	+1.4
2,424,935	+		LU632_RS12745	0.60	-1.3
2,424,957	+		LU632_RS12745	0.64	-2.7
2,424,979	-		LU632_RS12745	0.67	+0.4
2,424,979	-		LU632_RS12745	0.67	-1.1
2,424,992	+		LU632_RS12745	0.69	-2.9
2,425,063	-		LU632_RS12745	0.81	+0.4
2,425,163	+				+1.0
2,425,163	+				-0.4
2,425,164	-				+1.1
2,425,182	-				-0.1
2,425,357	-		LU632_RS12750	0.18	+0.3