Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS12525

Experiment: Experiment:TE2, Cucumber 6 Petiole 1 (TE2-S-C6-P1)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Experiment:TE2, Cucumber 6 Petiole 1 (TE2-S-C6-P1)
2,378,081	-		LU632_RS12520	0.24	-2.2
2,378,189	-		LU632_RS12520	0.59	-1.9
2,378,225	-		LU632_RS12520	0.71	-2.8
2,378,246	-		LU632_RS12520	0.77	-1.5
2,378,351	-				+0.1
2,378,457	+				-0.3
2,378,508	+				+0.4
2,378,651	+	pgpB	LU632_RS12525	0.25	+0.1
2,378,651	+	pgpB	LU632_RS12525	0.25	+0.3
2,378,651	+	pgpB	LU632_RS12525	0.25	+0.1
2,378,651	+	pgpB	LU632_RS12525	0.25	-0.0
2,378,656	-	pgpB	LU632_RS12525	0.25	-0.4
2,378,670	+	pgpB	LU632_RS12525	0.27	-0.4
2,378,671	-	pgpB	LU632_RS12525	0.27	-2.2
2,378,676	-	pgpB	LU632_RS12525	0.28	-1.9
2,378,676	-	pgpB	LU632_RS12525	0.28	-2.0
2,378,695	-	pgpB	LU632_RS12525	0.30	-0.8
2,378,732	+	pgpB	LU632_RS12525	0.35	+0.1
2,378,756	-	pgpB	LU632_RS12525	0.38	-0.3
2,378,905	-	pgpB	LU632_RS12525	0.58	+0.3
2,378,953	+	pgpB	LU632_RS12525	0.64	+0.2
2,378,953	+	pgpB	LU632_RS12525	0.64	-0.1
2,379,015	+	pgpB	LU632_RS12525	0.72	-2.8
2,379,105	+	pgpB	LU632_RS12525	0.84	-0.1
2,379,174	-				-0.3
2,379,224	+				+0.4
2,379,273	-				-1.8
2,379,273	-				-0.9
2,379,374	+				-0.9
2,379,381	+				+0.7
2,380,054	-				+0.8
2,380,054	-				-1.3
2,380,138	-				+0.1
2,380,144	+				-0.4
2,380,167	+				+0.7
2,380,167	+				+0.1
2,380,167	+				-0.8
2,380,168	-				+0.2
2,380,168	-				+0.1
2,380,209	-				-3.1
2,380,209	-				+0.4