Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS12255

Experiment: Experiment:TE2, Cucumber 6 Petiole 1 (TE2-S-C6-P1)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Experiment:TE2, Cucumber 6 Petiole 1 (TE2-S-C6-P1)
2,327,442	+		LU632_RS12250	0.76	+1.2
2,327,467	-		LU632_RS12250	0.77	+0.1
2,327,476	-		LU632_RS12250	0.77	+2.9
2,327,493	+		LU632_RS12250	0.78	-1.8
2,327,506	+		LU632_RS12250	0.79	+1.6
2,327,506	+		LU632_RS12250	0.79	-0.5
2,327,531	+		LU632_RS12250	0.80	+1.1
2,327,541	+		LU632_RS12250	0.80	+2.5
2,327,629	-		LU632_RS12250	0.84	+0.1
2,327,670	+		LU632_RS12250	0.86	-0.9
2,327,671	-		LU632_RS12250	0.86	+0.1
2,327,671	-		LU632_RS12250	0.86	-1.3
2,327,674	+		LU632_RS12250	0.86	-1.5
2,327,704	+		LU632_RS12250	0.87	+2.2
2,327,704	+		LU632_RS12250	0.87	-1.3
2,327,704	+		LU632_RS12250	0.87	-1.5
2,327,705	-		LU632_RS12250	0.87	+0.1
2,327,705	-		LU632_RS12250	0.87	+0.5
2,327,810	+				+2.8
2,327,811	-				-0.5
2,327,814	+				-0.7
2,327,843	-				+0.2
2,327,872	+				-1.2
2,328,010	+				-3.1
2,328,011	-				-1.0
2,328,011	-				+0.3
2,328,011	-				-0.2
2,328,084	+				+0.7
2,328,084	+				-0.8
2,328,157	+				-0.4
2,328,158	-				-1.5
2,328,158	-				-2.5
2,328,158	-				+0.3
2,328,158	-				+0.9
2,328,158	-				+3.3
2,328,158	-				-2.6
2,328,159	+				+1.2
2,328,159	+				-2.3
2,328,159	+				-1.1
2,328,159	+				-1.2
2,328,160	-				-3.3
2,328,160	-				-2.1
2,328,160	-				-1.0
2,328,323	+				+2.4
2,328,323	+				-0.7
2,328,363	+				+0.5
2,330,390	+				+0.1
2,330,390	+				-0.5
2,330,391	-				+0.7
2,330,391	-				+0.2
2,330,391	-				-0.3
2,330,393	+				+1.1
2,330,393	+				-0.5
2,330,394	-				+0.9
2,330,394	-				-1.3
2,330,394	-				+0.7
2,330,394	-				-0.9
2,330,395	+				+1.7
2,330,395	+				-1.2
2,330,395	+				+1.3
2,330,396	-				+0.9
2,330,396	-				+0.1
2,330,398	-				+0.1
2,330,398	-				+0.7
2,330,553	-				+1.0
2,330,634	+		LU632_RS12260	0.19	-0.9
2,330,634	+		LU632_RS12260	0.19	-1.5
2,331,112	-				+0.8