Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS12175

Experiment: Experiment:TE2, Cucumber 6 Petiole 1 (TE2-S-C6-P1)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Experiment:TE2, Cucumber 6 Petiole 1 (TE2-S-C6-P1)
2,307,805	+		LU632_RS12170	0.30	-1.5
2,308,244	+				-1.7
2,308,347	+				-0.1
2,308,347	+				+0.3
2,308,347	+				-3.1
2,308,391	+				+1.1
2,308,393	+				+1.2
2,308,393	+				+0.7
2,308,393	+				+2.7
2,308,393	+				+3.2
2,308,393	+				+1.7
2,308,393	+				+1.4
2,308,394	-				+1.6
2,308,394	-				+0.9
2,308,394	-				-1.5
2,308,394	-				+1.9
2,308,395	+				+0.1
2,308,395	+				+0.1
2,308,395	+				+0.9
2,308,395	+				+1.8
2,308,395	+				-0.0
2,308,395	+				+0.7
2,308,396	-				-0.0
2,308,396	-				+0.3
2,308,396	-				+1.2
2,308,417	+				-0.8
2,308,417	+				+2.0
2,308,417	+				+0.4
2,308,436	+				+0.4
2,308,453	+				-0.4
2,308,508	+				+0.9
2,308,514	-				+1.4
2,308,589	-				+2.3
2,308,590	+				+1.3
2,308,591	-				-0.4
2,308,591	-				+1.5
2,308,592	-				+0.9
2,308,593	+				+1.7
2,308,596	-				+2.4
2,308,596	-				-2.1
2,308,603	+				+1.7
2,308,603	+				+0.2
2,308,604	-				-3.6
2,308,606	-				+0.4
2,308,616	+				-2.4
2,308,617	-				+0.1
2,309,857	+				+0.7
2,309,857	+				-1.1
2,309,873	-				+0.8
2,309,899	+				+2.1
2,309,914	+		LU632_RS12180	0.11	+0.2
2,309,915	-		LU632_RS12180	0.12	-3.6
2,309,915	-		LU632_RS12180	0.12	+0.7
2,309,918	+		LU632_RS12180	0.12	-0.5
2,309,918	+		LU632_RS12180	0.12	-0.1
2,309,936	+		LU632_RS12180	0.16	-0.4
2,309,936	+		LU632_RS12180	0.16	-0.2
2,309,937	-		LU632_RS12180	0.16	-0.8
2,309,946	-		LU632_RS12180	0.18	-0.4
2,309,977	+		LU632_RS12180	0.24	+1.4
2,309,978	-		LU632_RS12180	0.24	+0.4
2,310,091	-		LU632_RS12180	0.46	+2.1
2,310,091	-		LU632_RS12180	0.46	-0.9
2,310,220	+		LU632_RS12180	0.71	-0.6
2,310,220	+		LU632_RS12180	0.71	+0.4
2,310,221	-		LU632_RS12180	0.71	+0.7
2,310,246	-		LU632_RS12180	0.76	-2.5
2,310,251	+		LU632_RS12180	0.77	-1.3
2,310,251	+		LU632_RS12180	0.77	+0.1
2,310,251	+		LU632_RS12180	0.77	+1.0
2,310,252	-		LU632_RS12180	0.77	+0.2
2,310,252	-		LU632_RS12180	0.77	-0.3
2,310,252	-		LU632_RS12180	0.77	-1.1
2,310,284	+		LU632_RS12180	0.83	+0.5
2,310,285	-		LU632_RS12180	0.83	+2.6
2,310,285	-		LU632_RS12180	0.83	-0.0
2,310,285	-		LU632_RS12180	0.83	+0.1
2,310,343	-				+1.2
2,310,383	-				-0.9
2,310,383	-				+0.9
2,310,385	+				+0.7
2,310,386	-				-2.6
2,310,386	-				-0.1
2,310,589	+		LU632_RS12185	0.15	-2.2
2,310,589	+		LU632_RS12185	0.15	-1.0
2,310,590	-		LU632_RS12185	0.15	-0.5
2,310,590	-		LU632_RS12185	0.15	+1.2
2,310,590	-		LU632_RS12185	0.15	+0.1
2,310,590	-		LU632_RS12185	0.15	-0.2
2,310,659	+		LU632_RS12185	0.22	+0.9
2,310,660	-		LU632_RS12185	0.22	+1.3
2,310,666	-		LU632_RS12185	0.23	-2.9
2,310,677	+		LU632_RS12185	0.24	+0.0