Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS10560

Experiment: Experiment:TE2, Cucumber 6 Petiole 1 (TE2-S-C6-P1)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Experiment:TE2, Cucumber 6 Petiole 1 (TE2-S-C6-P1)
2,016,374	-		LU632_RS10550	0.66	+0.5
2,016,374	-		LU632_RS10550	0.66	-1.5
2,016,453	+		LU632_RS10550	0.72	+0.2
2,016,454	-		LU632_RS10550	0.72	-0.8
2,016,493	+		LU632_RS10550	0.75	+0.2
2,016,496	+		LU632_RS10550	0.75	+1.4
2,016,526	+		LU632_RS10550	0.77	+1.5
2,016,897	+	fliJ	LU632_RS10555	0.17	+0.4
2,016,897	+	fliJ	LU632_RS10555	0.17	-0.1
2,016,898	-	fliJ	LU632_RS10555	0.17	-0.8
2,017,060	+	fliJ	LU632_RS10555	0.53	+0.6
2,017,061	-	fliJ	LU632_RS10555	0.53	+0.5
2,017,061	-	fliJ	LU632_RS10555	0.53	+0.6
2,017,097	+	fliJ	LU632_RS10555	0.62	-1.3
2,017,097	+	fliJ	LU632_RS10555	0.62	+0.7
2,017,097	+	fliJ	LU632_RS10555	0.62	-0.4
2,017,098	-	fliJ	LU632_RS10555	0.62	+2.7
2,017,098	-	fliJ	LU632_RS10555	0.62	-1.6
2,017,302	+				-1.4
2,017,420	+				+0.0
2,017,420	+				+0.0
2,017,456	+	fliI	LU632_RS10560	0.13	+0.3
2,017,475	+	fliI	LU632_RS10560	0.14	+0.5
2,017,548	-	fliI	LU632_RS10560	0.19	-0.1
2,017,598	+	fliI	LU632_RS10560	0.23	-1.8
2,017,598	+	fliI	LU632_RS10560	0.23	-1.8
2,017,598	+	fliI	LU632_RS10560	0.23	+2.1
2,017,599	-	fliI	LU632_RS10560	0.23	-1.4
2,017,599	-	fliI	LU632_RS10560	0.23	+0.7
2,017,599	-	fliI	LU632_RS10560	0.23	-0.8
2,017,599	-	fliI	LU632_RS10560	0.23	+0.8
2,017,599	-	fliI	LU632_RS10560	0.23	+0.5
2,017,671	-	fliI	LU632_RS10560	0.28	+0.8
2,017,672	+	fliI	LU632_RS10560	0.28	-0.5
2,017,672	+	fliI	LU632_RS10560	0.28	-0.8
2,017,673	-	fliI	LU632_RS10560	0.29	-1.8
2,017,895	-	fliI	LU632_RS10560	0.45	+1.2
2,017,973	+	fliI	LU632_RS10560	0.51	-0.1
2,018,001	+	fliI	LU632_RS10560	0.53	-1.2
2,018,087	+	fliI	LU632_RS10560	0.59	-0.7
2,018,208	-	fliI	LU632_RS10560	0.68	-1.1
2,018,220	-	fliI	LU632_RS10560	0.69	-2.4
2,018,220	-	fliI	LU632_RS10560	0.69	-0.8
2,018,220	-	fliI	LU632_RS10560	0.69	+0.1
2,018,327	+	fliI	LU632_RS10560	0.77	-2.6
2,018,362	+	fliI	LU632_RS10560	0.79	-0.8
2,018,363	-	fliI	LU632_RS10560	0.79	-0.4
2,018,363	-	fliI	LU632_RS10560	0.79	-3.5
2,018,392	-	fliI	LU632_RS10560	0.81	+1.4
2,018,392	-	fliI	LU632_RS10560	0.81	-1.4
2,018,619	+				+1.0
2,018,698	+				-1.8
2,018,815	+	fliH	LU632_RS10565	0.25	-0.0
2,018,840	-	fliH	LU632_RS10565	0.28	-2.4
2,018,885	-	fliH	LU632_RS10565	0.35	-0.1
2,018,885	-	fliH	LU632_RS10565	0.35	+0.8
2,018,885	-	fliH	LU632_RS10565	0.35	+0.9
2,018,885	-	fliH	LU632_RS10565	0.35	+1.3
2,018,918	+	fliH	LU632_RS10565	0.39	-0.7
2,018,918	+	fliH	LU632_RS10565	0.39	+0.6
2,018,919	-	fliH	LU632_RS10565	0.40	+0.2
2,019,175	+	fliH	LU632_RS10565	0.76	-0.1
2,019,175	+	fliH	LU632_RS10565	0.76	-0.4
2,019,175	+	fliH	LU632_RS10565	0.76	-0.4
2,019,175	+	fliH	LU632_RS10565	0.76	+0.5
2,019,175	+	fliH	LU632_RS10565	0.76	+0.2
2,019,176	-	fliH	LU632_RS10565	0.77	+0.2
2,019,295	+				+1.7
2,019,337	+				-0.8
2,019,337	+				-3.6
2,019,337	+				-1.2
2,019,337	+				-1.8
2,019,337	+				-1.1
2,019,337	+				+0.2
2,019,337	+				-1.8
2,019,337	+				+0.5
2,019,338	-				-1.6
2,019,338	-				+0.9
2,019,338	-				-0.2
2,019,338	-				-0.5
2,019,338	-				-0.0
2,019,434	+	fliG	LU632_RS10570	0.10	-1.2
2,019,434	+	fliG	LU632_RS10570	0.10	+1.7
2,019,434	+	fliG	LU632_RS10570	0.10	-1.6
2,019,434	-	fliG	LU632_RS10570	0.10	-0.7
2,019,435	-	fliG	LU632_RS10570	0.11	-2.5
2,019,435	-	fliG	LU632_RS10570	0.11	-0.6
2,019,435	-	fliG	LU632_RS10570	0.11	+2.6
2,019,473	+	fliG	LU632_RS10570	0.14	+0.4
2,019,474	-	fliG	LU632_RS10570	0.15	-0.7