Experiment: Experiment:TE2, Cucumber 6 Petiole 1 (TE2-S-C6-P1)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LU632_RS10315 and solA are separated by 88 nucleotides solA and bssS are separated by 108 nucleotides bssS and dinI are separated by 325 nucleotides
LU632_RS10315: LU632_RS10315 - MFS transporter, at 1,971,414 to 1,972,580
_RS10315
LU632_RS10320: solA - N-methyl-L-tryptophan oxidase, at 1,972,669 to 1,973,781
solA
LU632_RS10325: bssS - biofilm formation regulator BssS, at 1,973,890 to 1,974,144
bssS
LU632_RS10330: dinI - DNA damage-inducible protein I, at 1,974,470 to 1,974,715
dinI
Position (kb) 1972
1973
1974 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 1971.767 kb on + strand, within LU632_RS10315 at 1971.768 kb on - strand, within LU632_RS10315 at 1971.799 kb on + strand, within LU632_RS10315 at 1971.844 kb on + strand, within LU632_RS10315 at 1971.844 kb on + strand, within LU632_RS10315 at 1971.845 kb on - strand, within LU632_RS10315 at 1971.845 kb on - strand, within LU632_RS10315 at 1971.846 kb on + strand, within LU632_RS10315 at 1971.846 kb on + strand, within LU632_RS10315 at 1971.846 kb on + strand, within LU632_RS10315 at 1971.846 kb on + strand, within LU632_RS10315 at 1971.846 kb on + strand, within LU632_RS10315 at 1971.847 kb on - strand, within LU632_RS10315 at 1971.847 kb on - strand, within LU632_RS10315 at 1971.847 kb on - strand, within LU632_RS10315 at 1971.857 kb on - strand, within LU632_RS10315 at 1971.887 kb on + strand, within LU632_RS10315 at 1971.887 kb on + strand, within LU632_RS10315 at 1971.887 kb on + strand, within LU632_RS10315 at 1971.888 kb on - strand, within LU632_RS10315 at 1971.888 kb on - strand, within LU632_RS10315 at 1971.888 kb on - strand, within LU632_RS10315 at 1971.982 kb on - strand, within LU632_RS10315 at 1972.071 kb on + strand, within LU632_RS10315 at 1972.071 kb on + strand, within LU632_RS10315 at 1972.072 kb on - strand, within LU632_RS10315 at 1972.072 kb on - strand, within LU632_RS10315 at 1972.073 kb on + strand, within LU632_RS10315 at 1972.073 kb on + strand, within LU632_RS10315 at 1972.073 kb on + strand, within LU632_RS10315 at 1972.073 kb on + strand, within LU632_RS10315 at 1972.074 kb on - strand, within LU632_RS10315 at 1972.144 kb on - strand, within LU632_RS10315 at 1972.174 kb on - strand, within LU632_RS10315 at 1972.276 kb on + strand, within LU632_RS10315 at 1972.277 kb on - strand, within LU632_RS10315 at 1972.307 kb on - strand, within LU632_RS10315 at 1972.391 kb on - strand, within LU632_RS10315 at 1972.579 kb on - strand at 1972.609 kb on - strand at 1972.696 kb on + strand at 1972.839 kb on + strand, within solA at 1972.857 kb on - strand, within solA at 1972.981 kb on - strand, within solA at 1973.042 kb on + strand, within solA at 1973.042 kb on + strand, within solA at 1973.043 kb on - strand, within solA at 1973.066 kb on - strand, within solA at 1973.191 kb on + strand, within solA at 1973.275 kb on - strand, within solA at 1973.281 kb on - strand, within solA at 1973.281 kb on - strand, within solA at 1973.281 kb on - strand, within solA at 1973.438 kb on - strand, within solA at 1973.599 kb on + strand, within solA at 1973.599 kb on + strand, within solA at 1973.603 kb on + strand, within solA at 1973.603 kb on + strand, within solA at 1973.604 kb on - strand, within solA at 1973.604 kb on - strand, within solA at 1973.604 kb on - strand, within solA at 1973.699 kb on - strand at 1973.768 kb on - strand at 1973.768 kb on - strand at 1973.768 kb on - strand at 1973.768 kb on - strand at 1973.768 kb on - strand at 1973.775 kb on - strand at 1973.775 kb on - strand at 1973.775 kb on - strand at 1973.775 kb on - strand at 1973.775 kb on - strand at 1973.836 kb on - strand at 1973.836 kb on - strand at 1973.990 kb on - strand, within bssS at 1973.997 kb on - strand, within bssS at 1974.078 kb on + strand, within bssS at 1974.078 kb on + strand, within bssS at 1974.079 kb on - strand, within bssS at 1974.079 kb on - strand, within bssS at 1974.083 kb on - strand, within bssS at 1974.083 kb on - strand, within bssS at 1974.083 kb on - strand, within bssS at 1974.090 kb on + strand, within bssS at 1974.091 kb on - strand, within bssS at 1974.091 kb on - strand, within bssS at 1974.091 kb on - strand, within bssS at 1974.094 kb on - strand, within bssS at 1974.145 kb on + strand at 1974.145 kb on + strand at 1974.160 kb on - strand at 1974.172 kb on + strand at 1974.233 kb on - strand at 1974.235 kb on - strand at 1974.302 kb on + strand at 1974.303 kb on - strand at 1974.350 kb on - strand at 1974.383 kb on - strand at 1974.407 kb on - strand at 1974.408 kb on + strand at 1974.408 kb on + strand at 1974.409 kb on - strand at 1974.409 kb on - strand at 1974.409 kb on - strand at 1974.474 kb on + strand at 1974.474 kb on + strand at 1974.542 kb on + strand, within dinI at 1974.656 kb on + strand, within dinI at 1974.656 kb on + strand, within dinI at 1974.664 kb on + strand, within dinI at 1974.715 kb on + strand at 1974.715 kb on + strand at 1974.730 kb on - strand at 1974.735 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Experiment:TE2, Cucumber 6 Petiole 1 (TE2-S-C6-P1) remove 1,971,767 + LU632_RS10315 0.30 +0.6 1,971,768 - LU632_RS10315 0.30 -1.5 1,971,799 + LU632_RS10315 0.33 +1.0 1,971,844 + LU632_RS10315 0.37 -0.6 1,971,844 + LU632_RS10315 0.37 -1.8 1,971,845 - LU632_RS10315 0.37 +1.1 1,971,845 - LU632_RS10315 0.37 +1.2 1,971,846 + LU632_RS10315 0.37 +0.6 1,971,846 + LU632_RS10315 0.37 +0.1 1,971,846 + LU632_RS10315 0.37 -0.4 1,971,846 + LU632_RS10315 0.37 +0.4 1,971,846 + LU632_RS10315 0.37 -1.4 1,971,847 - LU632_RS10315 0.37 +2.4 1,971,847 - LU632_RS10315 0.37 -1.1 1,971,847 - LU632_RS10315 0.37 -0.7 1,971,857 - LU632_RS10315 0.38 +0.4 1,971,887 + LU632_RS10315 0.41 -0.6 1,971,887 + LU632_RS10315 0.41 -2.1 1,971,887 + LU632_RS10315 0.41 +1.4 1,971,888 - LU632_RS10315 0.41 -0.9 1,971,888 - LU632_RS10315 0.41 +0.9 1,971,888 - LU632_RS10315 0.41 +0.8 1,971,982 - LU632_RS10315 0.49 -0.4 1,972,071 + LU632_RS10315 0.56 +0.2 1,972,071 + LU632_RS10315 0.56 +0.7 1,972,072 - LU632_RS10315 0.56 +3.7 1,972,072 - LU632_RS10315 0.56 +1.1 1,972,073 + LU632_RS10315 0.56 -1.8 1,972,073 + LU632_RS10315 0.56 +0.6 1,972,073 + LU632_RS10315 0.56 -0.1 1,972,073 + LU632_RS10315 0.56 -1.5 1,972,074 - LU632_RS10315 0.57 +0.2 1,972,144 - LU632_RS10315 0.63 +1.1 1,972,174 - LU632_RS10315 0.65 +0.7 1,972,276 + LU632_RS10315 0.74 -0.5 1,972,277 - LU632_RS10315 0.74 -1.2 1,972,307 - LU632_RS10315 0.77 -0.7 1,972,391 - LU632_RS10315 0.84 -0.4 1,972,579 - +1.1 1,972,609 - +2.8 1,972,696 + -2.9 1,972,839 + solA LU632_RS10320 0.15 +1.3 1,972,857 - solA LU632_RS10320 0.17 -1.2 1,972,981 - solA LU632_RS10320 0.28 -1.1 1,973,042 + solA LU632_RS10320 0.34 +3.5 1,973,042 + solA LU632_RS10320 0.34 -0.2 1,973,043 - solA LU632_RS10320 0.34 -0.8 1,973,066 - solA LU632_RS10320 0.36 -2.4 1,973,191 + solA LU632_RS10320 0.47 +0.4 1,973,275 - solA LU632_RS10320 0.54 +0.2 1,973,281 - solA LU632_RS10320 0.55 +0.2 1,973,281 - solA LU632_RS10320 0.55 -1.6 1,973,281 - solA LU632_RS10320 0.55 -0.4 1,973,438 - solA LU632_RS10320 0.69 -3.1 1,973,599 + solA LU632_RS10320 0.84 -1.4 1,973,599 + solA LU632_RS10320 0.84 -1.2 1,973,603 + solA LU632_RS10320 0.84 +1.0 1,973,603 + solA LU632_RS10320 0.84 -0.8 1,973,604 - solA LU632_RS10320 0.84 +0.4 1,973,604 - solA LU632_RS10320 0.84 -0.3 1,973,604 - solA LU632_RS10320 0.84 +1.0 1,973,699 - +1.2 1,973,768 - -2.1 1,973,768 - +1.3 1,973,768 - +1.6 1,973,768 - -0.8 1,973,768 - -0.6 1,973,775 - -1.4 1,973,775 - -0.6 1,973,775 - -1.1 1,973,775 - -1.8 1,973,775 - -0.8 1,973,836 - -0.5 1,973,836 - +2.4 1,973,990 - bssS LU632_RS10325 0.39 +1.2 1,973,997 - bssS LU632_RS10325 0.42 +0.6 1,974,078 + bssS LU632_RS10325 0.74 -1.2 1,974,078 + bssS LU632_RS10325 0.74 -0.2 1,974,079 - bssS LU632_RS10325 0.74 -2.6 1,974,079 - bssS LU632_RS10325 0.74 +0.2 1,974,083 - bssS LU632_RS10325 0.76 -1.1 1,974,083 - bssS LU632_RS10325 0.76 +0.1 1,974,083 - bssS LU632_RS10325 0.76 +0.2 1,974,090 + bssS LU632_RS10325 0.78 -1.0 1,974,091 - bssS LU632_RS10325 0.79 -1.8 1,974,091 - bssS LU632_RS10325 0.79 -0.8 1,974,091 - bssS LU632_RS10325 0.79 +1.8 1,974,094 - bssS LU632_RS10325 0.80 +0.2 1,974,145 + -0.6 1,974,145 + -0.5 1,974,160 - -0.8 1,974,172 + +0.2 1,974,233 - -0.8 1,974,235 - -3.6 1,974,302 + +0.9 1,974,303 - -0.8 1,974,350 - +0.4 1,974,383 - +2.1 1,974,407 - +0.4 1,974,408 + -1.8 1,974,408 + +0.0 1,974,409 - +0.8 1,974,409 - -0.1 1,974,409 - -0.7 1,974,474 + +0.7 1,974,474 + -1.4 1,974,542 + dinI LU632_RS10330 0.29 +0.4 1,974,656 + dinI LU632_RS10330 0.76 +2.5 1,974,656 + dinI LU632_RS10330 0.76 -0.4 1,974,664 + dinI LU632_RS10330 0.79 -0.8 1,974,715 + +0.3 1,974,715 + +3.4 1,974,730 - +2.7 1,974,735 - -1.2
Or see this region's nucleotide sequence