Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS10150

Experiment: Experiment:TE2, Cucumber 6 Petiole 1 (TE2-S-C6-P1)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Experiment:TE2, Cucumber 6 Petiole 1 (TE2-S-C6-P1)
1,940,151	-				-2.2
1,940,180	-				+0.3
1,940,214	+				-1.1
1,940,299	+				-3.1
1,940,300	-				-0.4
1,940,303	+				-0.3
1,940,375	-				+0.3
1,940,473	+		LU632_RS10145	0.24	-0.9
1,940,474	-		LU632_RS10145	0.24	+0.3
1,940,540	+		LU632_RS10145	0.33	+3.4
1,940,540	+		LU632_RS10145	0.33	+1.5
1,940,591	-		LU632_RS10145	0.41	-1.5
1,940,591	-		LU632_RS10145	0.41	-1.3
1,940,622	+		LU632_RS10145	0.45	+0.2
1,940,622	+		LU632_RS10145	0.45	+0.0
1,940,622	+		LU632_RS10145	0.45	+1.0
1,940,623	-		LU632_RS10145	0.45	-0.4
1,940,623	-		LU632_RS10145	0.45	-2.9
1,940,625	-		LU632_RS10145	0.46	+1.3
1,940,625	-		LU632_RS10145	0.46	-1.8
1,940,775	-		LU632_RS10145	0.68	+0.4
1,940,775	-		LU632_RS10145	0.68	-0.5
1,940,916	-		LU632_RS10145	0.88	-0.4
1,940,921	-		LU632_RS10145	0.89	-0.1
1,941,069	-				+1.5
1,941,102	-				+1.6
1,941,102	-				-1.7
1,941,150	+	rutA	LU632_RS10150	0.10	-1.1
1,941,151	+	rutA	LU632_RS10150	0.10	+2.4
1,941,234	-	rutA	LU632_RS10150	0.18	+0.4
1,941,234	-	rutA	LU632_RS10150	0.18	+1.6
1,941,237	-	rutA	LU632_RS10150	0.18	-1.1
1,941,237	-	rutA	LU632_RS10150	0.18	-0.5
1,941,237	-	rutA	LU632_RS10150	0.18	+1.3
1,941,240	-	rutA	LU632_RS10150	0.18	-1.3
1,941,356	+	rutA	LU632_RS10150	0.29	+0.1
1,941,358	+	rutA	LU632_RS10150	0.29	+0.6
1,941,359	-	rutA	LU632_RS10150	0.29	-1.0
1,941,359	-	rutA	LU632_RS10150	0.29	+0.8
1,941,372	-	rutA	LU632_RS10150	0.30	+1.3
1,941,405	-	rutA	LU632_RS10150	0.33	-2.1
1,941,421	+	rutA	LU632_RS10150	0.35	+0.5
1,941,422	-	rutA	LU632_RS10150	0.35	-1.6
1,941,476	+	rutA	LU632_RS10150	0.40	+1.6
1,941,504	-	rutA	LU632_RS10150	0.42	+1.3
1,941,526	+	rutA	LU632_RS10150	0.44	-1.3
1,941,648	+	rutA	LU632_RS10150	0.56	+0.5
1,941,648	+	rutA	LU632_RS10150	0.56	-0.5
1,941,695	-	rutA	LU632_RS10150	0.60	+1.0
1,941,760	+	rutA	LU632_RS10150	0.66	-2.3
1,941,816	-	rutA	LU632_RS10150	0.71	-1.7
1,941,883	+	rutA	LU632_RS10150	0.77	+1.3
1,941,883	+	rutA	LU632_RS10150	0.77	-0.3
1,941,883	+	rutA	LU632_RS10150	0.77	+0.7
1,941,884	-	rutA	LU632_RS10150	0.77	+0.4
1,941,884	-	rutA	LU632_RS10150	0.77	-1.7
1,942,064	+				+0.6
1,942,065	-				+0.4
1,942,065	-				+2.3
1,942,066	+				-0.3
1,942,066	+				-0.2
1,942,067	-				-3.5
1,942,067	-				+1.6
1,942,067	-				-2.4
1,942,067	-				-1.7
1,942,116	-				+1.3
1,942,119	+				-1.3
1,942,144	+				-0.7
1,942,160	+				+0.3
1,942,163	+				-2.3
1,942,180	-				-0.3
1,942,183	+				-1.1
1,942,184	-				+1.5
1,942,184	-				+0.6
1,942,362	-				+0.8
1,942,406	+				-1.1
1,942,551	+	rutR	LU632_RS10155	0.23	-0.4
1,942,594	-	rutR	LU632_RS10155	0.30	+0.1
1,942,620	+	rutR	LU632_RS10155	0.35	-0.6
1,942,621	-	rutR	LU632_RS10155	0.35	+1.0
1,942,622	+	rutR	LU632_RS10155	0.35	+0.4
1,942,667	+	rutR	LU632_RS10155	0.43	-1.3
1,942,667	+	rutR	LU632_RS10155	0.43	+0.3
1,942,667	+	rutR	LU632_RS10155	0.43	+0.3
1,942,667	+	rutR	LU632_RS10155	0.43	-1.1
1,942,667	+	rutR	LU632_RS10155	0.43	-0.1
1,942,668	-	rutR	LU632_RS10155	0.43	+0.1
1,942,668	-	rutR	LU632_RS10155	0.43	+0.3
1,942,752	+	rutR	LU632_RS10155	0.58	-1.2
1,942,988	-				-2.1
1,943,010	+				-1.4
1,943,011	-				+1.5
1,943,121	-				-1.9