Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS10115

Experiment: Experiment:TE2, Cucumber 6 Petiole 1 (TE2-S-C6-P1)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Experiment:TE2, Cucumber 6 Petiole 1 (TE2-S-C6-P1)
1,932,536	-	yccA	LU632_RS10105	0.57	+0.7
1,932,659	-	yccA	LU632_RS10105	0.76	+3.9
1,932,659	-	yccA	LU632_RS10105	0.76	+0.7
1,932,748	-	yccA	LU632_RS10105	0.89	-0.5
1,932,751	+	yccA	LU632_RS10105	0.90	+0.3
1,932,752	-				+0.6
1,932,809	-				-2.5
1,932,817	+				+1.5
1,932,823	+				+1.4
1,932,857	-				-1.4
1,932,996	+				+1.1
1,933,018	-				-1.5
1,933,018	-				-0.4
1,933,018	-				+0.4
1,933,018	-				+1.9
1,933,019	+				-0.3
1,933,143	+				-0.1
1,933,144	-				+0.3
1,933,177	+				+0.7
1,933,319	+				+3.3
1,933,415	-				+0.0
1,933,462	-				+0.0
1,933,594	-				+2.0
1,933,594	-				+0.9
1,933,609	-				-0.1
1,933,670	+				-2.7
1,933,670	+				+0.3
1,933,724	-				+0.7
1,933,725	+				-1.7
1,933,741	-				-1.3
1,933,813	+				+2.6
1,933,813	+				+0.5
1,933,814	-				-0.4
1,933,814	-				+0.3
1,933,823	-				+0.5
1,933,848	+				-2.3
1,933,848	+				-0.8
1,933,849	-				+0.1
1,933,850	+				-1.8
1,933,850	+				-0.7
1,933,851	-				+0.0
1,933,851	-				+1.4
1,933,851	-				+2.6
1,933,873	+				+0.1
1,933,876	-				+1.1
1,933,967	-				+1.3
1,934,075	+				+0.5
1,934,075	+				+0.0
1,934,128	+				+0.8
1,934,176	+	agp	LU632_RS10120	0.11	+1.0
1,934,176	+	agp	LU632_RS10120	0.11	-0.7
1,934,220	+	agp	LU632_RS10120	0.14	+0.1
1,934,227	+	agp	LU632_RS10120	0.14	+0.9
1,934,249	+	agp	LU632_RS10120	0.16	+0.8
1,934,250	-	agp	LU632_RS10120	0.16	-2.3
1,934,250	-	agp	LU632_RS10120	0.16	-0.7
1,934,250	-	agp	LU632_RS10120	0.16	+0.3
1,934,250	-	agp	LU632_RS10120	0.16	-2.2
1,934,295	+	agp	LU632_RS10120	0.19	+1.3
1,934,330	+	agp	LU632_RS10120	0.21	-0.7
1,934,336	+	agp	LU632_RS10120	0.22	+1.5
1,934,357	-	agp	LU632_RS10120	0.23	-0.5
1,934,357	-	agp	LU632_RS10120	0.23	-1.0
1,934,357	-	agp	LU632_RS10120	0.23	-0.1
1,934,452	-	agp	LU632_RS10120	0.30	-0.4
1,934,455	+	agp	LU632_RS10120	0.30	+0.7
1,934,464	+	agp	LU632_RS10120	0.30	-1.5
1,934,465	-	agp	LU632_RS10120	0.30	-0.4
1,934,465	-	agp	LU632_RS10120	0.30	+0.8