Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS09940

Experiment: Experiment:TE2, Cucumber 6 Petiole 1 (TE2-S-C6-P1)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Experiment:TE2, Cucumber 6 Petiole 1 (TE2-S-C6-P1)
1,898,624	-	pepN	LU632_RS09930	0.84	-2.0
1,898,687	-	pepN	LU632_RS09930	0.86	-0.8
1,898,922	-				-0.7
1,898,942	+				+0.1
1,898,956	+				-0.3
1,899,167	+				+2.3
1,899,259	+				-0.4
1,899,259	+				-0.2
1,899,259	+				+0.3
1,899,260	-				+1.7
1,899,263	-				+1.5
1,899,263	-				+1.4
1,899,306	-				-0.5
1,899,336	-		LU632_RS09935	0.20	-1.5
1,899,370	-		LU632_RS09935	0.44	-0.4
1,899,378	+		LU632_RS09935	0.49	+1.1
1,900,546	+	ssuE	LU632_RS09950	0.22	-0.3
1,900,569	-	ssuE	LU632_RS09950	0.26	+0.3
1,900,640	+	ssuE	LU632_RS09950	0.39	+0.7
1,900,641	-	ssuE	LU632_RS09950	0.39	-1.7
1,900,641	-	ssuE	LU632_RS09950	0.39	+2.6
1,900,641	-	ssuE	LU632_RS09950	0.39	+0.3
1,900,641	-	ssuE	LU632_RS09950	0.39	+0.6
1,900,641	-	ssuE	LU632_RS09950	0.39	-1.3
1,900,641	-	ssuE	LU632_RS09950	0.39	+0.0
1,900,681	+	ssuE	LU632_RS09950	0.47	-0.7
1,900,726	-	ssuE	LU632_RS09950	0.55	-0.0
1,900,740	+	ssuE	LU632_RS09950	0.58	+0.0
1,900,849	+	ssuE	LU632_RS09950	0.78	+0.0
1,900,852	-	ssuE	LU632_RS09950	0.78	-0.7
1,900,853	+	ssuE	LU632_RS09950	0.79	+0.9
1,900,854	-	ssuE	LU632_RS09950	0.79	+1.3
1,900,957	-				-0.0
1,900,960	-				+1.2
1,900,973	-				+0.5
1,901,023	+				+1.1
1,901,050	+				-0.6
1,901,050	+				-2.5
1,901,088	+				+0.9
1,901,088	+				-0.7
1,901,092	+				-0.2
1,901,092	+				-0.6
1,901,100	+				+1.8
1,901,131	+				-1.1