Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS09540

Experiment: Experiment:TE2, Cucumber 6 Petiole 1 (TE2-S-C6-P1)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Experiment:TE2, Cucumber 6 Petiole 1 (TE2-S-C6-P1)
1,804,665	+		LU632_RS09530	0.62	+2.6
1,804,666	-		LU632_RS09530	0.63	+0.5
1,804,679	+		LU632_RS09530	0.69	+2.2
1,804,680	-		LU632_RS09530	0.69	-4.6
1,804,680	-		LU632_RS09530	0.69	+0.1
1,804,723	+		LU632_RS09530	0.89	-2.1
1,804,724	-				-0.3
1,804,724	-				-0.4
1,804,724	-				+0.4
1,804,828	+				-3.2
1,804,828	+				+0.5
1,804,888	+				+0.4
1,804,888	+				-0.8
1,804,889	-				+1.8
1,804,889	-				-1.6
1,804,892	+				-0.9
1,804,893	-				+0.1
1,804,975	+		LU632_RS09535	0.11	-2.8
1,805,126	+		LU632_RS09535	0.31	+0.2
1,805,237	+		LU632_RS09535	0.46	-2.1
1,805,237	+		LU632_RS09535	0.46	+1.4
1,805,238	-		LU632_RS09535	0.46	-0.4
1,805,261	+		LU632_RS09535	0.49	-0.6
1,805,304	-		LU632_RS09535	0.54	+2.2
1,805,414	+		LU632_RS09535	0.69	+2.0
1,805,506	+		LU632_RS09535	0.81	-2.1
1,805,507	-		LU632_RS09535	0.81	-0.4
1,805,564	+		LU632_RS09535	0.88	-0.4
1,805,565	-		LU632_RS09535	0.88	-2.6
1,805,618	-				+0.7
1,805,625	+				+2.1
1,805,625	+				+0.4
1,805,625	+				+1.1
1,805,626	-				-0.5
1,805,657	+				+0.2
1,805,658	-				+0.3
1,805,737	+				+0.3
1,805,742	+				-1.2
1,805,799	+	moeA	LU632_RS09540	0.12	+0.6
1,805,947	+	moeA	LU632_RS09540	0.23	-1.4
1,805,966	+	moeA	LU632_RS09540	0.25	+0.2
1,805,967	-	moeA	LU632_RS09540	0.25	+0.4
1,806,113	+	moeA	LU632_RS09540	0.37	-0.4
1,806,114	-	moeA	LU632_RS09540	0.37	-0.6
1,806,114	-	moeA	LU632_RS09540	0.37	-1.0
1,806,282	+	moeA	LU632_RS09540	0.51	-0.1
1,806,283	-	moeA	LU632_RS09540	0.51	-1.2
1,806,514	+	moeA	LU632_RS09540	0.69	-2.6
1,806,514	+	moeA	LU632_RS09540	0.69	+2.0
1,806,606	+	moeA	LU632_RS09540	0.77	+0.6
1,806,908	+				-0.4
1,806,918	-				-1.0
1,806,931	-		LU632_RS09545	0.10	+1.4
1,806,944	+		LU632_RS09545	0.19	-1.4
1,806,946	+		LU632_RS09545	0.20	+1.4
1,806,947	-		LU632_RS09545	0.21	-2.8
1,806,949	+		LU632_RS09545	0.22	-0.2
1,807,011	+		LU632_RS09545	0.65	-0.6
1,807,087	-				-1.1
1,807,087	-				+0.6
1,807,100	-				+1.5
1,807,126	+				+1.0
1,807,147	+				+0.1
1,807,148	-				+1.4
1,807,150	-				-0.2
1,807,314	-				+1.6
1,807,315	+				+0.4
1,807,316	-				+0.7
1,807,425	+		LU632_RS09550	0.20	+1.8
1,807,501	+		LU632_RS09550	0.28	+0.1
1,807,714	+		LU632_RS09550	0.50	+1.1
1,807,769	-		LU632_RS09550	0.55	+0.7