Experiment: Experiment:TE2, Cucumber 6 Petiole 1 (TE2-S-C6-P1)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LU632_RS09270 and LU632_RS09275 are separated by 39 nucleotides LU632_RS09275 and LU632_RS09280 overlap by 10 nucleotides LU632_RS09280 and LU632_RS09285 are separated by 21 nucleotides LU632_RS09285 and LU632_RS09290 are separated by 18 nucleotides
LU632_RS09270: LU632_RS09270 - DUF3772 domain-containing protein, at 1,749,527 to 1,751,965
_RS09270
LU632_RS09275: LU632_RS09275 - hypothetical protein, at 1,752,005 to 1,752,235
_RS09275
LU632_RS09280: LU632_RS09280 - tautomerase family protein, at 1,752,226 to 1,752,453
_RS09280
LU632_RS09285: LU632_RS09285 - pseudouridine-5'-phosphate glycosidase, at 1,752,475 to 1,753,410
_RS09285
LU632_RS09290: LU632_RS09290 - amino acid adenylation domain-containing protein, at 1,753,429 to 1,757,283
_RS09290
Position (kb) 1752
1753 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 1751.312 kb on + strand, within LU632_RS09270 at 1751.470 kb on - strand, within LU632_RS09270 at 1751.492 kb on - strand, within LU632_RS09270 at 1751.591 kb on - strand, within LU632_RS09270 at 1751.887 kb on - strand at 1751.989 kb on + strand at 1751.990 kb on - strand at 1752.034 kb on - strand, within LU632_RS09275 at 1752.123 kb on + strand, within LU632_RS09275 at 1752.158 kb on - strand, within LU632_RS09275 at 1752.227 kb on + strand at 1752.227 kb on + strand at 1752.227 kb on + strand at 1752.227 kb on + strand at 1752.228 kb on - strand at 1752.228 kb on - strand at 1752.228 kb on - strand at 1752.228 kb on - strand at 1752.228 kb on - strand at 1752.228 kb on - strand at 1752.228 kb on - strand at 1752.233 kb on + strand at 1752.234 kb on - strand at 1752.274 kb on - strand, within LU632_RS09280 at 1752.274 kb on - strand, within LU632_RS09280 at 1752.275 kb on + strand, within LU632_RS09280 at 1752.275 kb on + strand, within LU632_RS09280 at 1752.275 kb on + strand, within LU632_RS09280 at 1752.500 kb on + strand at 1752.542 kb on - strand at 1752.893 kb on + strand, within LU632_RS09285 at 1752.894 kb on - strand, within LU632_RS09285 at 1752.943 kb on + strand, within LU632_RS09285 at 1752.987 kb on + strand, within LU632_RS09285 at 1753.119 kb on + strand, within LU632_RS09285 at 1753.119 kb on + strand, within LU632_RS09285 at 1753.119 kb on + strand, within LU632_RS09285 at 1753.120 kb on - strand, within LU632_RS09285 at 1753.120 kb on - strand, within LU632_RS09285 at 1753.120 kb on - strand, within LU632_RS09285 at 1753.120 kb on - strand, within LU632_RS09285 at 1753.120 kb on - strand, within LU632_RS09285 at 1753.215 kb on + strand, within LU632_RS09285 at 1753.383 kb on - strand at 1753.383 kb on - strand at 1753.392 kb on + strand at 1753.393 kb on - strand at 1753.438 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Experiment:TE2, Cucumber 6 Petiole 1 (TE2-S-C6-P1) remove 1,751,312 + LU632_RS09270 0.73 -0.3 1,751,470 - LU632_RS09270 0.80 -0.2 1,751,492 - LU632_RS09270 0.81 -2.5 1,751,591 - LU632_RS09270 0.85 +1.4 1,751,887 - -0.9 1,751,989 + +0.4 1,751,990 - +0.4 1,752,034 - LU632_RS09275 0.13 +1.4 1,752,123 + LU632_RS09275 0.51 +1.9 1,752,158 - LU632_RS09275 0.66 +2.4 1,752,227 + -0.7 1,752,227 + -1.0 1,752,227 + +0.2 1,752,227 + -1.6 1,752,228 - -0.2 1,752,228 - -3.1 1,752,228 - +0.2 1,752,228 - -2.7 1,752,228 - -0.3 1,752,228 - -0.6 1,752,228 - +0.4 1,752,233 + +1.2 1,752,234 - +1.0 1,752,274 - LU632_RS09280 0.21 +0.6 1,752,274 - LU632_RS09280 0.21 -0.6 1,752,275 + LU632_RS09280 0.21 +0.5 1,752,275 + LU632_RS09280 0.21 +0.4 1,752,275 + LU632_RS09280 0.21 -0.6 1,752,500 + +1.4 1,752,542 - -0.1 1,752,893 + LU632_RS09285 0.45 +0.9 1,752,894 - LU632_RS09285 0.45 -1.1 1,752,943 + LU632_RS09285 0.50 +1.3 1,752,987 + LU632_RS09285 0.55 +0.0 1,753,119 + LU632_RS09285 0.69 -1.6 1,753,119 + LU632_RS09285 0.69 +0.4 1,753,119 + LU632_RS09285 0.69 -1.1 1,753,120 - LU632_RS09285 0.69 -1.6 1,753,120 - LU632_RS09285 0.69 +0.9 1,753,120 - LU632_RS09285 0.69 +2.9 1,753,120 - LU632_RS09285 0.69 -1.2 1,753,120 - LU632_RS09285 0.69 +1.6 1,753,215 + LU632_RS09285 0.79 +2.0 1,753,383 - -1.6 1,753,383 - +0.6 1,753,392 + -1.2 1,753,393 - -0.1 1,753,438 + +1.9
Or see this region's nucleotide sequence