Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS09240

Experiment: Experiment:TE2, Cucumber 6 Petiole 1 (TE2-S-C6-P1)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Experiment:TE2, Cucumber 6 Petiole 1 (TE2-S-C6-P1)
1,742,062	-				-1.2
1,742,071	+				+1.0
1,742,148	+		LU632_RS09235	0.14	+0.2
1,742,153	-		LU632_RS09235	0.15	+0.2
1,742,153	-		LU632_RS09235	0.15	+3.8
1,742,287	-		LU632_RS09235	0.28	-0.6
1,742,287	-		LU632_RS09235	0.28	-0.5
1,742,287	-		LU632_RS09235	0.28	-2.0
1,742,314	-		LU632_RS09235	0.30	-0.2
1,742,400	+		LU632_RS09235	0.39	-2.8
1,742,400	+		LU632_RS09235	0.39	-1.6
1,742,400	+		LU632_RS09235	0.39	+0.4
1,742,400	+		LU632_RS09235	0.39	-1.4
1,742,401	-		LU632_RS09235	0.39	-1.7
1,742,487	+		LU632_RS09235	0.47	+0.4
1,742,533	+		LU632_RS09235	0.51	-3.0
1,742,597	+		LU632_RS09235	0.58	-0.6
1,742,653	-		LU632_RS09235	0.63	-1.2
1,742,653	-		LU632_RS09235	0.63	-0.1
1,742,655	+		LU632_RS09235	0.63	-1.8
1,742,753	+		LU632_RS09235	0.73	+3.3
1,742,753	+		LU632_RS09235	0.73	-3.2
1,742,862	+		LU632_RS09235	0.83	-0.9
1,742,863	-		LU632_RS09235	0.83	+0.4
1,743,046	-				+0.4
1,743,196	+		LU632_RS09240	0.14	-0.2
1,743,197	-		LU632_RS09240	0.14	+0.4
1,743,223	+		LU632_RS09240	0.17	-1.9
1,743,223	+		LU632_RS09240	0.17	+0.1
1,743,310	-		LU632_RS09240	0.25	-0.6
1,743,325	+		LU632_RS09240	0.27	-2.6
1,743,326	-		LU632_RS09240	0.27	+0.9
1,743,497	-		LU632_RS09240	0.44	-0.3
1,743,506	+		LU632_RS09240	0.45	+0.8
1,743,588	-		LU632_RS09240	0.54	-2.0
1,743,641	+		LU632_RS09240	0.59	+0.9
1,743,644	+		LU632_RS09240	0.59	-2.0
1,743,645	-		LU632_RS09240	0.59	-0.3
1,743,660	+		LU632_RS09240	0.61	-0.3
1,743,698	+		LU632_RS09240	0.65	-1.1
1,743,711	-		LU632_RS09240	0.66	+0.0
1,743,991	+				-0.3
1,744,028	+				-0.0
1,744,072	-				-2.0
1,744,126	-				-1.1
1,744,143	+				+0.3
1,744,143	+				-0.9
1,744,144	-				-1.2
1,744,144	-				+0.4
1,744,167	-				+2.2
1,744,183	-				-1.4
1,744,632	-				-1.8
1,744,743	+				+0.2
1,744,744	-				-1.2
1,744,755	+				+2.1
1,745,007	+				-1.2
1,745,008	-				+1.0
1,745,011	+				+0.9
1,745,012	-				-0.0
1,745,012	-				-0.2
1,745,012	-				-1.2
1,745,012	-				-1.6
1,745,018	+				+0.8