Experiment: Experiment:TE2, Cucumber 6 Petiole 1 (TE2-S-C6-P1)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt moaB and moaC are separated by 3 nucleotides moaC and moaD overlap by 8 nucleotides moaD and moaE are separated by 40 nucleotides moaE and LU632_RS09200 are separated by 276 nucleotides
LU632_RS09180: moaB - molybdenum cofactor biosynthesis protein B, at 1,730,136 to 1,730,651
moaB
LU632_RS09185: moaC - cyclic pyranopterin monophosphate synthase MoaC, at 1,730,655 to 1,731,140
moaC
LU632_RS09190: moaD - molybdopterin synthase sulfur carrier subunit, at 1,731,133 to 1,731,378
moaD
LU632_RS09195: moaE - molybdopterin synthase catalytic subunit MoaE, at 1,731,419 to 1,731,832
moaE
LU632_RS09200: LU632_RS09200 - DUF1615 domain-containing protein, at 1,732,109 to 1,733,221
_RS09200
Position (kb) 1731
1732 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 1730.431 kb on + strand, within moaB at 1730.431 kb on + strand, within moaB at 1730.431 kb on + strand, within moaB at 1730.432 kb on - strand, within moaB at 1730.432 kb on - strand, within moaB at 1730.432 kb on - strand, within moaB at 1730.432 kb on - strand, within moaB at 1730.553 kb on - strand, within moaB at 1730.697 kb on - strand at 1730.697 kb on - strand at 1730.890 kb on + strand, within moaC at 1731.033 kb on + strand, within moaC at 1731.033 kb on + strand, within moaC at 1731.034 kb on - strand, within moaC at 1731.038 kb on + strand, within moaC at 1731.039 kb on - strand, within moaC at 1731.039 kb on - strand, within moaC at 1731.039 kb on - strand, within moaC at 1731.039 kb on - strand, within moaC at 1731.093 kb on - strand at 1731.376 kb on + strand at 1731.376 kb on + strand at 1731.376 kb on + strand at 1731.377 kb on - strand at 1731.539 kb on + strand, within moaE at 1731.830 kb on + strand at 1731.830 kb on + strand at 1732.059 kb on + strand at 1732.156 kb on - strand at 1732.171 kb on + strand at 1732.172 kb on - strand at 1732.186 kb on + strand at 1732.502 kb on + strand, within LU632_RS09200 at 1732.503 kb on - strand, within LU632_RS09200 at 1732.503 kb on - strand, within LU632_RS09200 at 1732.571 kb on - strand, within LU632_RS09200 at 1732.572 kb on + strand, within LU632_RS09200 at 1732.572 kb on + strand, within LU632_RS09200 at 1732.572 kb on + strand, within LU632_RS09200 at 1732.572 kb on + strand, within LU632_RS09200 at 1732.573 kb on - strand, within LU632_RS09200 at 1732.711 kb on - strand, within LU632_RS09200 at 1732.711 kb on - strand, within LU632_RS09200 at 1732.817 kb on + strand, within LU632_RS09200 at 1732.817 kb on + strand, within LU632_RS09200
Per-strain Table
Position Strand Gene LocusTag Fraction Experiment:TE2, Cucumber 6 Petiole 1 (TE2-S-C6-P1) remove 1,730,431 + moaB LU632_RS09180 0.57 -3.8 1,730,431 + moaB LU632_RS09180 0.57 +0.4 1,730,431 + moaB LU632_RS09180 0.57 +0.4 1,730,432 - moaB LU632_RS09180 0.57 +0.9 1,730,432 - moaB LU632_RS09180 0.57 +1.9 1,730,432 - moaB LU632_RS09180 0.57 -1.0 1,730,432 - moaB LU632_RS09180 0.57 +0.8 1,730,553 - moaB LU632_RS09180 0.81 -1.0 1,730,697 - +3.7 1,730,697 - -2.6 1,730,890 + moaC LU632_RS09185 0.48 -0.2 1,731,033 + moaC LU632_RS09185 0.78 +2.7 1,731,033 + moaC LU632_RS09185 0.78 -0.0 1,731,034 - moaC LU632_RS09185 0.78 +0.1 1,731,038 + moaC LU632_RS09185 0.79 -2.8 1,731,039 - moaC LU632_RS09185 0.79 -0.6 1,731,039 - moaC LU632_RS09185 0.79 +0.4 1,731,039 - moaC LU632_RS09185 0.79 -0.6 1,731,039 - moaC LU632_RS09185 0.79 +0.4 1,731,093 - +1.9 1,731,376 + -0.7 1,731,376 + -2.6 1,731,376 + -2.8 1,731,377 - +0.7 1,731,539 + moaE LU632_RS09195 0.29 -1.3 1,731,830 + +0.5 1,731,830 + -0.6 1,732,059 + -2.0 1,732,156 - -0.5 1,732,171 + +2.4 1,732,172 - -3.5 1,732,186 + -0.1 1,732,502 + LU632_RS09200 0.35 -0.5 1,732,503 - LU632_RS09200 0.35 -1.5 1,732,503 - LU632_RS09200 0.35 +3.4 1,732,571 - LU632_RS09200 0.42 +0.6 1,732,572 + LU632_RS09200 0.42 +1.4 1,732,572 + LU632_RS09200 0.42 -0.5 1,732,572 + LU632_RS09200 0.42 -2.0 1,732,572 + LU632_RS09200 0.42 +0.8 1,732,573 - LU632_RS09200 0.42 -0.5 1,732,711 - LU632_RS09200 0.54 -0.2 1,732,711 - LU632_RS09200 0.54 -2.2 1,732,817 + LU632_RS09200 0.64 +1.0 1,732,817 + LU632_RS09200 0.64 +0.1
Or see this region's nucleotide sequence