Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS08775

Experiment: Experiment:TE2, Cucumber 6 Petiole 1 (TE2-S-C6-P1)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Experiment:TE2, Cucumber 6 Petiole 1 (TE2-S-C6-P1)
1,648,717	-		LU632_RS08770	0.18	-1.2
1,648,749	+		LU632_RS08770	0.21	-1.5
1,648,750	-		LU632_RS08770	0.21	-0.9
1,648,862	-		LU632_RS08770	0.31	-2.3
1,648,885	+		LU632_RS08770	0.33	-2.3
1,648,886	-		LU632_RS08770	0.33	-0.6
1,648,899	-		LU632_RS08770	0.34	-1.2
1,648,975	+		LU632_RS08770	0.41	-1.0
1,648,976	-		LU632_RS08770	0.41	-0.6
1,648,992	+		LU632_RS08770	0.42	-0.2
1,648,998	+		LU632_RS08770	0.43	-1.4
1,648,999	-		LU632_RS08770	0.43	-2.3
1,648,999	-		LU632_RS08770	0.43	-2.6
1,649,014	+		LU632_RS08770	0.44	-0.6
1,649,014	+		LU632_RS08770	0.44	+0.4
1,649,050	+		LU632_RS08770	0.48	-2.9
1,649,050	+		LU632_RS08770	0.48	-0.6
1,649,234	+		LU632_RS08770	0.64	-2.4
1,649,453	-		LU632_RS08770	0.83	-1.9
1,649,456	+		LU632_RS08770	0.83	-0.6
1,649,603	+				-0.5
1,649,603	+				+0.0
1,649,665	+				-2.4
1,649,695	+				-3.6
1,649,695	+				+0.1
1,649,769	+		LU632_RS08775	0.25	-2.0
1,649,770	-		LU632_RS08775	0.25	-3.6
1,649,771	+		LU632_RS08775	0.26	-2.2
1,649,771	+		LU632_RS08775	0.26	-3.6
1,649,772	-		LU632_RS08775	0.26	-1.6
1,649,851	-		LU632_RS08775	0.44	-2.1
1,649,967	+		LU632_RS08775	0.71	-3.6
1,649,968	+		LU632_RS08775	0.71	-2.0
1,649,983	+		LU632_RS08775	0.74	+0.4
1,650,042	-		LU632_RS08775	0.88	-3.6
1,650,048	+		LU632_RS08775	0.89	-1.8
1,650,049	-		LU632_RS08775	0.89	+0.4
1,650,085	-				-1.8
1,650,112	+				-1.6
1,650,113	-				-2.2
1,650,113	-				-2.1
1,650,121	+				-0.6
1,650,225	+				+0.4
1,650,226	-				-2.3
1,650,226	-				+2.0
1,650,229	+				-3.2
1,650,229	+				-0.4
1,650,230	-				-1.9
1,650,230	-				+0.6
1,650,248	+				-2.6
1,650,249	-				+0.4
1,650,249	-				-1.9
1,650,249	-				-0.1
1,650,516	+	wzc	LU632_RS08780	0.19	-4.3
1,650,517	-	wzc	LU632_RS08780	0.19	-2.9
1,650,517	-	wzc	LU632_RS08780	0.19	-0.4
1,650,622	+	wzc	LU632_RS08780	0.24	-1.2
1,650,739	+	wzc	LU632_RS08780	0.29	-0.4
1,650,776	-	wzc	LU632_RS08780	0.31	-1.5
1,650,809	+	wzc	LU632_RS08780	0.32	-2.6
1,650,866	+	wzc	LU632_RS08780	0.35	-3.8
1,650,866	+	wzc	LU632_RS08780	0.35	+0.4
1,650,867	-	wzc	LU632_RS08780	0.35	-2.6
1,650,867	-	wzc	LU632_RS08780	0.35	-1.5
1,650,867	-	wzc	LU632_RS08780	0.35	-1.2
1,650,974	-	wzc	LU632_RS08780	0.40	-3.3
1,650,982	+	wzc	LU632_RS08780	0.40	-1.2
1,651,012	+	wzc	LU632_RS08780	0.41	-2.1
1,651,013	-	wzc	LU632_RS08780	0.41	+0.8
1,651,013	-	wzc	LU632_RS08780	0.41	+1.0
1,651,013	-	wzc	LU632_RS08780	0.41	-2.2
1,651,013	-	wzc	LU632_RS08780	0.41	-3.3
1,651,052	-	wzc	LU632_RS08780	0.43	-3.2
1,651,056	+	wzc	LU632_RS08780	0.43	-1.9
1,651,057	-	wzc	LU632_RS08780	0.43	-2.4