Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS08680

Experiment: Experiment:TE2, Cucumber 6 Petiole 1 (TE2-S-C6-P1)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Experiment:TE2, Cucumber 6 Petiole 1 (TE2-S-C6-P1)
1,625,925	-	baeS	LU632_RS08675	0.29	-0.1
1,625,973	+	baeS	LU632_RS08675	0.32	+0.8
1,625,977	-	baeS	LU632_RS08675	0.33	+0.6
1,626,172	-	baeS	LU632_RS08675	0.47	-0.1
1,626,180	+	baeS	LU632_RS08675	0.47	-1.2
1,626,496	+	baeS	LU632_RS08675	0.70	-0.7
1,626,498	+	baeS	LU632_RS08675	0.70	+0.4
1,626,499	-	baeS	LU632_RS08675	0.70	-0.5
1,626,499	-	baeS	LU632_RS08675	0.70	-0.1
1,626,576	-	baeS	LU632_RS08675	0.76	-2.1
1,626,722	+	baeS	LU632_RS08675	0.86	+0.8
1,627,019	-				-0.1
1,627,019	-				-2.4
1,627,124	+	mdtD	LU632_RS08680	0.16	+0.2
1,627,232	+	mdtD	LU632_RS08680	0.24	+1.2
1,627,232	+	mdtD	LU632_RS08680	0.24	-1.9
1,627,319	+	mdtD	LU632_RS08680	0.31	+0.8
1,627,323	+	mdtD	LU632_RS08680	0.31	+0.3
1,627,323	+	mdtD	LU632_RS08680	0.31	-1.2
1,627,324	-	mdtD	LU632_RS08680	0.31	-0.6
1,627,371	-	mdtD	LU632_RS08680	0.35	+0.7
1,627,377	+	mdtD	LU632_RS08680	0.35	+0.1
1,627,377	+	mdtD	LU632_RS08680	0.35	-1.6
1,627,379	+	mdtD	LU632_RS08680	0.36	-2.6
1,627,379	+	mdtD	LU632_RS08680	0.36	+2.6
1,627,386	-	mdtD	LU632_RS08680	0.36	-1.2
1,627,386	-	mdtD	LU632_RS08680	0.36	+0.3
1,627,467	+	mdtD	LU632_RS08680	0.42	-2.1
1,627,470	-	mdtD	LU632_RS08680	0.42	+0.4
1,627,470	-	mdtD	LU632_RS08680	0.42	-1.2
1,627,528	+	mdtD	LU632_RS08680	0.47	+1.4
1,627,529	-	mdtD	LU632_RS08680	0.47	-0.2
1,627,545	+	mdtD	LU632_RS08680	0.48	+0.7
1,627,546	-	mdtD	LU632_RS08680	0.48	-0.8
1,627,595	-	mdtD	LU632_RS08680	0.52	+0.1
1,627,661	-	mdtD	LU632_RS08680	0.57	-0.2
1,627,661	-	mdtD	LU632_RS08680	0.57	+3.0
1,627,795	+	mdtD	LU632_RS08680	0.67	-1.1
1,627,824	+	mdtD	LU632_RS08680	0.69	-1.9
1,627,897	+	mdtD	LU632_RS08680	0.75	-2.0
1,627,897	+	mdtD	LU632_RS08680	0.75	+1.4
1,627,898	-	mdtD	LU632_RS08680	0.75	+0.7
1,627,898	-	mdtD	LU632_RS08680	0.75	+0.0
1,627,908	+	mdtD	LU632_RS08680	0.76	+0.6
1,627,908	+	mdtD	LU632_RS08680	0.76	-2.9
1,627,908	+	mdtD	LU632_RS08680	0.76	+1.5
1,627,908	+	mdtD	LU632_RS08680	0.76	+0.4
1,627,908	+	mdtD	LU632_RS08680	0.76	-0.8
1,627,908	+	mdtD	LU632_RS08680	0.76	+0.8
1,627,908	+	mdtD	LU632_RS08680	0.76	-2.4
1,627,908	+	mdtD	LU632_RS08680	0.76	-1.3
1,627,909	-	mdtD	LU632_RS08680	0.76	+1.6
1,627,909	-	mdtD	LU632_RS08680	0.76	+0.7
1,627,909	-	mdtD	LU632_RS08680	0.76	-0.7
1,627,909	-	mdtD	LU632_RS08680	0.76	+0.3
1,627,909	-	mdtD	LU632_RS08680	0.76	-0.0
1,627,909	-	mdtD	LU632_RS08680	0.76	-1.2
1,627,909	-	mdtD	LU632_RS08680	0.76	+1.6
1,627,909	-	mdtD	LU632_RS08680	0.76	-1.0
1,627,909	-	mdtD	LU632_RS08680	0.76	+0.9
1,627,999	+	mdtD	LU632_RS08680	0.83	-1.9
1,628,123	+				-0.1
1,628,123	+				-0.3
1,628,123	+				+0.4
1,628,123	+				-1.3
1,628,123	+				+0.8
1,628,123	+				+1.3
1,628,158	+				-1.1
1,628,158	+				-2.2
1,628,159	-				+0.1
1,628,164	+				-0.8
1,628,199	+				+1.3
1,628,199	+				+0.1
1,628,200	-				+1.7
1,628,203	+				+2.3
1,628,254	+				+0.6
1,628,255	-				+0.7
1,628,255	-				+0.4
1,628,356	-				-2.6
1,628,366	+				-0.7
1,628,366	+				+1.4
1,628,368	+				-1.2
1,628,368	+				+1.2
1,628,368	+				-0.0
1,628,368	+				-0.1
1,628,369	-				-0.0
1,628,369	-				+0.6
1,628,369	-				+1.3
1,628,369	-				+0.0
1,628,369	-				+1.8
1,628,369	-				-1.9
1,628,374	+				-2.4
1,628,481	+				-3.5
1,628,481	+				+0.3
1,628,482	-				+1.1
1,628,525	+				-1.6
1,628,525	+				+0.5
1,628,525	+				-1.6
1,628,526	-				+0.3
1,628,526	-				+1.7
1,628,560	-				-0.1
1,628,621	+	mdtC	LU632_RS08685	0.10	-0.0
1,628,621	+	mdtC	LU632_RS08685	0.10	+0.4
1,628,622	-	mdtC	LU632_RS08685	0.10	-0.6
1,628,622	-	mdtC	LU632_RS08685	0.10	+1.1
1,628,622	-	mdtC	LU632_RS08685	0.10	+0.2
1,628,638	-	mdtC	LU632_RS08685	0.11	+0.6
1,628,638	-	mdtC	LU632_RS08685	0.11	-1.0
1,628,648	+	mdtC	LU632_RS08685	0.11	+0.0
1,628,648	+	mdtC	LU632_RS08685	0.11	+0.2
1,628,652	+	mdtC	LU632_RS08685	0.11	+1.5
1,628,750	+	mdtC	LU632_RS08685	0.14	-1.7
1,628,751	-	mdtC	LU632_RS08685	0.14	-0.6
1,628,767	+	mdtC	LU632_RS08685	0.15	-0.8
1,628,776	+	mdtC	LU632_RS08685	0.15	+2.7
1,628,777	-	mdtC	LU632_RS08685	0.15	+0.6
1,628,777	-	mdtC	LU632_RS08685	0.15	-2.3
1,628,797	+	mdtC	LU632_RS08685	0.16	-2.6
1,628,798	-	mdtC	LU632_RS08685	0.16	-0.9
1,628,823	+	mdtC	LU632_RS08685	0.17	-0.5
1,629,099	+	mdtC	LU632_RS08685	0.26	-0.2
1,629,100	-	mdtC	LU632_RS08685	0.26	-0.2
1,629,100	-	mdtC	LU632_RS08685	0.26	+0.7
1,629,122	-	mdtC	LU632_RS08685	0.26	+0.8
1,629,142	-	mdtC	LU632_RS08685	0.27	+0.1
1,629,169	+	mdtC	LU632_RS08685	0.28	-1.3
1,629,169	+	mdtC	LU632_RS08685	0.28	-0.2
1,629,169	+	mdtC	LU632_RS08685	0.28	+2.3
1,629,169	+	mdtC	LU632_RS08685	0.28	-1.2
1,629,169	+	mdtC	LU632_RS08685	0.28	-0.9
1,629,169	+	mdtC	LU632_RS08685	0.28	-0.4
1,629,170	-	mdtC	LU632_RS08685	0.28	-0.6
1,629,170	-	mdtC	LU632_RS08685	0.28	-2.8