Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS08335

Experiment: Experiment:TE2, Cucumber 6 Petiole 1 (TE2-S-C6-P1)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Experiment:TE2, Cucumber 6 Petiole 1 (TE2-S-C6-P1)
1,567,263	-	bamC	LU632_RS08330	0.49	+0.6
1,567,297	-	bamC	LU632_RS08330	0.52	-1.8
1,567,384	+	bamC	LU632_RS08330	0.61	+1.9
1,567,385	-	bamC	LU632_RS08330	0.61	-0.0
1,567,474	+	bamC	LU632_RS08330	0.69	+0.7
1,567,544	-	bamC	LU632_RS08330	0.76	+2.5
1,567,592	+	bamC	LU632_RS08330	0.81	-2.2
1,567,592	+	bamC	LU632_RS08330	0.81	+0.4
1,567,593	-	bamC	LU632_RS08330	0.81	+0.9
1,567,595	-	bamC	LU632_RS08330	0.81	-2.4
1,567,595	-	bamC	LU632_RS08330	0.81	-1.2
1,567,726	+				-1.2
1,567,726	+				-0.8
1,567,727	-				+0.6
1,567,956	+				+0.1
1,568,027	+				-0.0
1,568,027	+				+0.5
1,568,028	-				+0.6
1,568,053	-				-1.0
1,568,077	+				+0.2
1,568,187	-				-2.8
1,568,192	-				-2.4
1,568,192	-				-3.8
1,568,509	+		LU632_RS08335	0.38	-2.2
1,568,631	-		LU632_RS08335	0.55	-3.2
1,568,640	+		LU632_RS08335	0.57	-0.6
1,568,685	-		LU632_RS08335	0.63	-1.8
1,569,084	+		LU632_RS08340	0.14	-2.2
1,569,085	-		LU632_RS08340	0.14	+0.3
1,569,085	-		LU632_RS08340	0.14	+1.7
1,569,086	+		LU632_RS08340	0.14	+1.4
1,569,109	-		LU632_RS08340	0.18	+1.0
1,569,165	+		LU632_RS08340	0.27	+0.3
1,569,189	+		LU632_RS08340	0.31	+1.8
1,569,189	+		LU632_RS08340	0.31	-0.9
1,569,192	-		LU632_RS08340	0.31	-0.5
1,569,208	-		LU632_RS08340	0.33	+0.3
1,569,225	-		LU632_RS08340	0.36	-1.2
1,569,417	+		LU632_RS08340	0.66	-0.6
1,569,417	+		LU632_RS08340	0.66	-1.6
1,569,418	-		LU632_RS08340	0.66	+4.2
1,569,418	-		LU632_RS08340	0.66	-1.2
1,569,454	+		LU632_RS08340	0.72	-0.3
1,569,455	-		LU632_RS08340	0.72	-1.3
1,569,455	-		LU632_RS08340	0.72	-1.6
1,569,455	-		LU632_RS08340	0.72	+1.9
1,569,523	+		LU632_RS08340	0.83	-0.0
1,569,548	+		LU632_RS08340	0.87	+1.7
1,569,549	-		LU632_RS08340	0.87	+1.5
1,569,549	-		LU632_RS08340	0.87	+0.7
1,569,641	+				+0.3
1,569,652	+				+2.7
1,569,652	+				-2.1
1,569,652	+				+1.4
1,569,741	+				-1.0
1,569,805	-				-0.3
1,569,829	+				-0.6
1,569,861	+		LU632_RS08345	0.11	+0.8
1,569,862	-		LU632_RS08345	0.11	+0.2