Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS07870

Experiment: Experiment:TE2, Cucumber 6 Petiole 1 (TE2-S-C6-P1)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Experiment:TE2, Cucumber 6 Petiole 1 (TE2-S-C6-P1)
1,469,769	+	purF	LU632_RS07865	0.40	-4.9
1,469,769	+	purF	LU632_RS07865	0.40	-4.6
1,469,769	+	purF	LU632_RS07865	0.40	-4.8
1,469,769	+	purF	LU632_RS07865	0.40	-3.4
1,469,769	+	purF	LU632_RS07865	0.40	-3.8
1,469,769	+	purF	LU632_RS07865	0.40	-2.9
1,469,770	-	purF	LU632_RS07865	0.41	-6.4
1,469,770	-	purF	LU632_RS07865	0.41	-3.0
1,469,770	-	purF	LU632_RS07865	0.41	-3.1
1,469,804	+	purF	LU632_RS07865	0.43	-3.8
1,469,804	+	purF	LU632_RS07865	0.43	-5.4
1,469,805	-	purF	LU632_RS07865	0.43	-4.1
1,469,848	+	purF	LU632_RS07865	0.46	-2.8
1,469,848	+	purF	LU632_RS07865	0.46	-3.5
1,469,849	-	purF	LU632_RS07865	0.46	-2.7
1,469,905	-	purF	LU632_RS07865	0.49	-5.7
1,469,905	-	purF	LU632_RS07865	0.49	-3.4
1,469,923	+	purF	LU632_RS07865	0.51	-2.8
1,469,923	+	purF	LU632_RS07865	0.51	-1.7
1,469,924	-	purF	LU632_RS07865	0.51	-4.9
1,469,971	+	purF	LU632_RS07865	0.54	-3.3
1,469,989	-	purF	LU632_RS07865	0.55	-0.7
1,470,041	+	purF	LU632_RS07865	0.58	-2.7
1,470,041	+	purF	LU632_RS07865	0.58	-4.2
1,470,041	+	purF	LU632_RS07865	0.58	-4.4
1,470,042	-	purF	LU632_RS07865	0.58	-4.1
1,470,159	+	purF	LU632_RS07865	0.66	-3.3
1,470,159	+	purF	LU632_RS07865	0.66	-2.9
1,470,159	+	purF	LU632_RS07865	0.66	-3.9
1,470,160	-	purF	LU632_RS07865	0.66	-0.7
1,470,160	-	purF	LU632_RS07865	0.66	-1.3
1,470,207	+	purF	LU632_RS07865	0.69	+0.3
1,470,252	-	purF	LU632_RS07865	0.72	-5.9
1,470,328	+	purF	LU632_RS07865	0.77	-2.4
1,470,329	-	purF	LU632_RS07865	0.77	-0.4
1,470,381	+	purF	LU632_RS07865	0.81	-4.5
1,470,382	-	purF	LU632_RS07865	0.81	+0.3
1,470,382	-	purF	LU632_RS07865	0.81	-0.7
1,470,382	-	purF	LU632_RS07865	0.81	-4.1
1,470,382	-	purF	LU632_RS07865	0.81	-3.3
1,470,551	-				-2.5
1,470,578	-				-1.7
1,470,689	-				+0.3
1,470,695	+				-1.3
1,470,695	+				+0.2
1,470,698	+				+1.3
1,470,698	+				+1.2
1,470,698	+				+0.3
1,470,698	+				-2.5
1,470,698	+				-0.7
1,470,698	+				-0.0
1,470,698	+				-1.0
1,470,699	-				-1.7
1,470,699	-				+0.5
1,470,699	-				-0.7
1,470,714	+				+0.1
1,471,336	+				-0.7
1,471,337	-				+0.2
1,471,398	-				+0.2
1,471,566	-		LU632_RS07875	0.49	-0.3
1,471,681	+		LU632_RS07875	0.78	+0.6
1,471,736	-				+1.2
1,471,736	-				-1.5
1,471,764	+				+0.5
1,471,764	+				-1.8
1,471,765	-				+2.0
1,471,897	+				+1.5
1,471,947	+				-1.8
1,471,947	+				-2.4
1,472,033	+				+2.3
1,472,033	+				-1.3
1,472,033	+				-0.6
1,472,034	-				+0.8
1,472,034	-				-0.3
1,472,034	-				-0.1
1,472,082	+				-1.7
1,472,082	+				-2.3
1,472,088	-				+0.6
1,472,133	+				+1.9
1,472,236	+		LU632_RS07880	0.17	+2.1
1,472,289	+		LU632_RS07880	0.23	-0.1
1,472,289	+		LU632_RS07880	0.23	+0.3
1,472,289	+		LU632_RS07880	0.23	+0.1
1,472,289	+		LU632_RS07880	0.23	-3.0
1,472,290	-		LU632_RS07880	0.23	-0.6
1,472,293	+		LU632_RS07880	0.23	-2.8
1,472,293	+		LU632_RS07880	0.23	-0.5
1,472,294	-		LU632_RS07880	0.23	-0.5
1,472,294	-		LU632_RS07880	0.23	+0.7
1,472,299	-		LU632_RS07880	0.24	+0.9