Experiment: Experiment:TE2, Cucumber 6 Petiole 1 (TE2-S-C6-P1)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt gcvT and gcvH are separated by 75 nucleotides gcvH and gcvP are separated by 23 nucleotides gcvP and LU632_RS05920 are separated by 263 nucleotides LU632_RS05920 and LU632_RS05925 are separated by 133 nucleotides
LU632_RS05905: gcvT - glycine cleavage system aminomethyltransferase GcvT, at 1,120,052 to 1,121,146
gcvT
LU632_RS05910: gcvH - glycine cleavage system protein GcvH, at 1,121,222 to 1,121,608
gcvH
LU632_RS05915: gcvP - aminomethyl-transferring glycine dehydrogenase, at 1,121,632 to 1,124,514
gcvP
LU632_RS05920: LU632_RS05920 - hypothetical protein, at 1,124,778 to 1,125,068
_RS05920
LU632_RS05925: LU632_RS05925 - transcriptional regulator, at 1,125,202 to 1,125,312
_RS05925
Position (kb) 1121
1122
1123
1124
1125 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 1120.634 kb on + strand, within gcvT at 1120.757 kb on + strand, within gcvT at 1120.801 kb on + strand, within gcvT at 1120.839 kb on - strand, within gcvT at 1120.951 kb on + strand, within gcvT at 1120.951 kb on + strand, within gcvT at 1121.024 kb on - strand, within gcvT at 1121.024 kb on - strand, within gcvT at 1121.076 kb on + strand at 1121.076 kb on + strand at 1121.077 kb on - strand at 1121.077 kb on - strand at 1121.148 kb on - strand at 1121.196 kb on + strand at 1121.232 kb on + strand at 1121.233 kb on - strand at 1121.236 kb on + strand at 1121.249 kb on + strand at 1121.251 kb on - strand at 1121.375 kb on + strand, within gcvH at 1121.376 kb on - strand, within gcvH at 1121.432 kb on + strand, within gcvH at 1121.432 kb on + strand, within gcvH at 1121.432 kb on + strand, within gcvH at 1121.432 kb on + strand, within gcvH at 1121.432 kb on + strand, within gcvH at 1121.432 kb on + strand, within gcvH at 1121.432 kb on + strand, within gcvH at 1121.432 kb on + strand, within gcvH at 1121.432 kb on + strand, within gcvH at 1121.432 kb on + strand, within gcvH at 1121.433 kb on - strand, within gcvH at 1121.433 kb on - strand, within gcvH at 1121.433 kb on - strand, within gcvH at 1121.433 kb on - strand, within gcvH at 1121.463 kb on + strand, within gcvH at 1121.464 kb on - strand, within gcvH at 1121.587 kb on + strand at 1121.597 kb on - strand at 1121.597 kb on - strand at 1121.597 kb on - strand at 1121.661 kb on + strand at 1121.661 kb on + strand at 1121.673 kb on + strand at 1121.779 kb on - strand at 1121.873 kb on - strand at 1121.881 kb on + strand at 1121.896 kb on + strand at 1121.956 kb on + strand, within gcvP at 1121.965 kb on + strand, within gcvP at 1121.965 kb on + strand, within gcvP at 1121.966 kb on - strand, within gcvP at 1122.030 kb on - strand, within gcvP at 1122.131 kb on + strand, within gcvP at 1122.131 kb on + strand, within gcvP at 1122.256 kb on + strand, within gcvP at 1122.316 kb on + strand, within gcvP at 1122.316 kb on + strand, within gcvP at 1122.378 kb on + strand, within gcvP at 1122.467 kb on - strand, within gcvP at 1122.562 kb on - strand, within gcvP at 1122.562 kb on - strand, within gcvP at 1122.630 kb on + strand, within gcvP at 1122.636 kb on + strand, within gcvP at 1122.637 kb on - strand, within gcvP at 1122.637 kb on - strand, within gcvP at 1122.637 kb on - strand, within gcvP at 1122.660 kb on + strand, within gcvP at 1122.738 kb on + strand, within gcvP at 1122.738 kb on + strand, within gcvP at 1122.739 kb on - strand, within gcvP at 1122.739 kb on - strand, within gcvP at 1122.739 kb on - strand, within gcvP at 1122.881 kb on - strand, within gcvP at 1122.881 kb on - strand, within gcvP at 1122.946 kb on - strand, within gcvP at 1123.102 kb on + strand, within gcvP at 1123.102 kb on + strand, within gcvP at 1123.102 kb on + strand, within gcvP at 1123.102 kb on + strand, within gcvP at 1123.103 kb on - strand, within gcvP at 1123.171 kb on - strand, within gcvP at 1123.207 kb on - strand, within gcvP at 1123.264 kb on + strand, within gcvP at 1123.683 kb on + strand, within gcvP at 1123.683 kb on + strand, within gcvP at 1123.717 kb on + strand, within gcvP at 1123.718 kb on - strand, within gcvP at 1123.719 kb on + strand, within gcvP at 1123.936 kb on + strand, within gcvP at 1123.936 kb on + strand, within gcvP at 1124.003 kb on - strand, within gcvP at 1124.039 kb on + strand, within gcvP at 1124.039 kb on + strand, within gcvP at 1124.041 kb on + strand, within gcvP at 1124.075 kb on + strand, within gcvP at 1124.077 kb on - strand, within gcvP at 1124.077 kb on - strand, within gcvP at 1124.244 kb on + strand at 1124.245 kb on - strand at 1124.245 kb on - strand at 1124.306 kb on + strand at 1124.374 kb on + strand at 1124.375 kb on - strand at 1124.375 kb on - strand at 1124.415 kb on + strand at 1124.416 kb on - strand at 1124.416 kb on - strand at 1124.416 kb on - strand at 1124.419 kb on + strand at 1124.529 kb on - strand at 1124.556 kb on - strand at 1124.564 kb on + strand at 1124.568 kb on + strand at 1124.635 kb on - strand at 1124.717 kb on + strand at 1124.717 kb on + strand at 1124.717 kb on + strand at 1124.717 kb on + strand at 1124.718 kb on - strand at 1124.813 kb on + strand, within LU632_RS05920 at 1124.813 kb on + strand, within LU632_RS05920 at 1124.852 kb on - strand, within LU632_RS05920 at 1124.852 kb on - strand, within LU632_RS05920 at 1124.967 kb on - strand, within LU632_RS05920 at 1125.030 kb on - strand, within LU632_RS05920 at 1125.030 kb on - strand, within LU632_RS05920 at 1125.042 kb on - strand at 1125.122 kb on + strand at 1125.122 kb on + strand at 1125.123 kb on - strand at 1125.123 kb on - strand at 1125.182 kb on - strand at 1125.204 kb on - strand at 1125.279 kb on - strand, within LU632_RS05925 at 1125.295 kb on - strand, within LU632_RS05925 at 1125.328 kb on - strand at 1125.335 kb on + strand at 1125.357 kb on - strand at 1125.357 kb on - strand at 1125.370 kb on + strand at 1125.370 kb on + strand at 1125.370 kb on + strand at 1125.370 kb on + strand at 1125.371 kb on - strand at 1125.371 kb on - strand at 1125.371 kb on - strand at 1125.371 kb on - strand at 1125.395 kb on - strand at 1125.490 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Experiment:TE2, Cucumber 6 Petiole 1 (TE2-S-C6-P1) remove 1,120,634 + gcvT LU632_RS05905 0.53 +0.2 1,120,757 + gcvT LU632_RS05905 0.64 +0.4 1,120,801 + gcvT LU632_RS05905 0.68 -0.0 1,120,839 - gcvT LU632_RS05905 0.72 -0.2 1,120,951 + gcvT LU632_RS05905 0.82 +0.6 1,120,951 + gcvT LU632_RS05905 0.82 -2.6 1,121,024 - gcvT LU632_RS05905 0.89 -0.8 1,121,024 - gcvT LU632_RS05905 0.89 -0.0 1,121,076 + +1.4 1,121,076 + -1.2 1,121,077 - +1.3 1,121,077 - -0.1 1,121,148 - +0.4 1,121,196 + -0.1 1,121,232 + +1.8 1,121,233 - -1.1 1,121,236 + +0.4 1,121,249 + -0.6 1,121,251 - -3.2 1,121,375 + gcvH LU632_RS05910 0.40 +1.8 1,121,376 - gcvH LU632_RS05910 0.40 -1.4 1,121,432 + gcvH LU632_RS05910 0.54 +1.7 1,121,432 + gcvH LU632_RS05910 0.54 -0.6 1,121,432 + gcvH LU632_RS05910 0.54 -0.4 1,121,432 + gcvH LU632_RS05910 0.54 +2.2 1,121,432 + gcvH LU632_RS05910 0.54 +2.1 1,121,432 + gcvH LU632_RS05910 0.54 -2.6 1,121,432 + gcvH LU632_RS05910 0.54 +0.9 1,121,432 + gcvH LU632_RS05910 0.54 +2.5 1,121,432 + gcvH LU632_RS05910 0.54 -0.9 1,121,432 + gcvH LU632_RS05910 0.54 -0.6 1,121,433 - gcvH LU632_RS05910 0.55 +0.4 1,121,433 - gcvH LU632_RS05910 0.55 +0.1 1,121,433 - gcvH LU632_RS05910 0.55 +4.3 1,121,433 - gcvH LU632_RS05910 0.55 +0.4 1,121,463 + gcvH LU632_RS05910 0.62 +1.4 1,121,464 - gcvH LU632_RS05910 0.63 +1.0 1,121,587 + -1.7 1,121,597 - +1.5 1,121,597 - -1.2 1,121,597 - +0.8 1,121,661 + +0.7 1,121,661 + +0.4 1,121,673 + +1.1 1,121,779 - +0.3 1,121,873 - +0.3 1,121,881 + +1.2 1,121,896 + +1.7 1,121,956 + gcvP LU632_RS05915 0.11 -0.2 1,121,965 + gcvP LU632_RS05915 0.12 +1.3 1,121,965 + gcvP LU632_RS05915 0.12 -1.5 1,121,966 - gcvP LU632_RS05915 0.12 +0.6 1,122,030 - gcvP LU632_RS05915 0.14 -1.9 1,122,131 + gcvP LU632_RS05915 0.17 +1.2 1,122,131 + gcvP LU632_RS05915 0.17 -0.6 1,122,256 + gcvP LU632_RS05915 0.22 +0.4 1,122,316 + gcvP LU632_RS05915 0.24 -3.2 1,122,316 + gcvP LU632_RS05915 0.24 -3.0 1,122,378 + gcvP LU632_RS05915 0.26 +1.4 1,122,467 - gcvP LU632_RS05915 0.29 +0.2 1,122,562 - gcvP LU632_RS05915 0.32 -2.2 1,122,562 - gcvP LU632_RS05915 0.32 +3.0 1,122,630 + gcvP LU632_RS05915 0.35 +0.4 1,122,636 + gcvP LU632_RS05915 0.35 +2.3 1,122,637 - gcvP LU632_RS05915 0.35 -1.6 1,122,637 - gcvP LU632_RS05915 0.35 -0.4 1,122,637 - gcvP LU632_RS05915 0.35 +0.0 1,122,660 + gcvP LU632_RS05915 0.36 -0.6 1,122,738 + gcvP LU632_RS05915 0.38 +0.4 1,122,738 + gcvP LU632_RS05915 0.38 -0.6 1,122,739 - gcvP LU632_RS05915 0.38 +1.1 1,122,739 - gcvP LU632_RS05915 0.38 -2.1 1,122,739 - gcvP LU632_RS05915 0.38 -3.0 1,122,881 - gcvP LU632_RS05915 0.43 +0.4 1,122,881 - gcvP LU632_RS05915 0.43 -2.4 1,122,946 - gcvP LU632_RS05915 0.46 +0.2 1,123,102 + gcvP LU632_RS05915 0.51 -1.0 1,123,102 + gcvP LU632_RS05915 0.51 -0.6 1,123,102 + gcvP LU632_RS05915 0.51 -0.3 1,123,102 + gcvP LU632_RS05915 0.51 +0.7 1,123,103 - gcvP LU632_RS05915 0.51 +1.8 1,123,171 - gcvP LU632_RS05915 0.53 +0.2 1,123,207 - gcvP LU632_RS05915 0.55 +0.4 1,123,264 + gcvP LU632_RS05915 0.57 +0.4 1,123,683 + gcvP LU632_RS05915 0.71 +1.6 1,123,683 + gcvP LU632_RS05915 0.71 +0.2 1,123,717 + gcvP LU632_RS05915 0.72 -0.2 1,123,718 - gcvP LU632_RS05915 0.72 +2.2 1,123,719 + gcvP LU632_RS05915 0.72 -1.9 1,123,936 + gcvP LU632_RS05915 0.80 +0.2 1,123,936 + gcvP LU632_RS05915 0.80 -0.2 1,124,003 - gcvP LU632_RS05915 0.82 -1.8 1,124,039 + gcvP LU632_RS05915 0.83 +0.8 1,124,039 + gcvP LU632_RS05915 0.83 +0.6 1,124,041 + gcvP LU632_RS05915 0.84 -0.4 1,124,075 + gcvP LU632_RS05915 0.85 +0.4 1,124,077 - gcvP LU632_RS05915 0.85 -1.9 1,124,077 - gcvP LU632_RS05915 0.85 +0.0 1,124,244 + +1.2 1,124,245 - +0.5 1,124,245 - +0.4 1,124,306 + +1.4 1,124,374 + +2.4 1,124,375 - +3.2 1,124,375 - +0.5 1,124,415 + -1.0 1,124,416 - +0.2 1,124,416 - +0.8 1,124,416 - +0.4 1,124,419 + -0.6 1,124,529 - -0.1 1,124,556 - +0.4 1,124,564 + -0.6 1,124,568 + -1.1 1,124,635 - -0.3 1,124,717 + -1.9 1,124,717 + -1.1 1,124,717 + +0.6 1,124,717 + +0.4 1,124,718 - +1.6 1,124,813 + LU632_RS05920 0.12 -0.1 1,124,813 + LU632_RS05920 0.12 +0.2 1,124,852 - LU632_RS05920 0.25 +0.6 1,124,852 - LU632_RS05920 0.25 +0.4 1,124,967 - LU632_RS05920 0.65 -0.5 1,125,030 - LU632_RS05920 0.87 +0.3 1,125,030 - LU632_RS05920 0.87 -0.3 1,125,042 - +0.2 1,125,122 + -0.2 1,125,122 + -0.1 1,125,123 - -1.0 1,125,123 - +0.4 1,125,182 - +0.2 1,125,204 - -1.3 1,125,279 - LU632_RS05925 0.69 +0.8 1,125,295 - LU632_RS05925 0.84 -1.6 1,125,328 - -1.5 1,125,335 + -2.4 1,125,357 - -0.0 1,125,357 - +0.4 1,125,370 + -1.0 1,125,370 + -1.6 1,125,370 + -0.6 1,125,370 + -1.5 1,125,371 - +0.1 1,125,371 - +0.9 1,125,371 - -2.6 1,125,371 - +1.3 1,125,395 - -1.6 1,125,490 - +1.2
Or see this region's nucleotide sequence