Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS05485

Experiment: Experiment:TE2, Cucumber 6 Petiole 1 (TE2-S-C6-P1)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Experiment:TE2, Cucumber 6 Petiole 1 (TE2-S-C6-P1)
1,056,794	-				-1.4
1,056,794	-				+0.4
1,057,223	-	gshB	LU632_RS05480	0.53	+1.2
1,057,297	-	gshB	LU632_RS05480	0.61	+0.4
1,057,736	-				+0.8
1,057,774	-				-3.1
1,057,774	-				-3.1
1,057,831	-	rsmE	LU632_RS05485	0.12	+1.3
1,057,831	-	rsmE	LU632_RS05485	0.12	-3.1
1,057,937	+	rsmE	LU632_RS05485	0.26	-1.6
1,057,937	+	rsmE	LU632_RS05485	0.26	-1.2
1,057,937	+	rsmE	LU632_RS05485	0.26	-0.1
1,057,938	-	rsmE	LU632_RS05485	0.26	+0.1
1,057,938	-	rsmE	LU632_RS05485	0.26	+0.6
1,057,938	-	rsmE	LU632_RS05485	0.26	-0.6
1,057,940	+	rsmE	LU632_RS05485	0.27	+0.7
1,057,941	-	rsmE	LU632_RS05485	0.27	+5.1
1,057,941	-	rsmE	LU632_RS05485	0.27	+1.9
1,058,028	+	rsmE	LU632_RS05485	0.39	-0.3
1,058,029	-	rsmE	LU632_RS05485	0.39	+1.3
1,058,156	+	rsmE	LU632_RS05485	0.56	-1.6
1,058,232	+	rsmE	LU632_RS05485	0.66	-2.4
1,058,233	-	rsmE	LU632_RS05485	0.67	+0.3
1,058,233	-	rsmE	LU632_RS05485	0.67	+0.4
1,058,233	-	rsmE	LU632_RS05485	0.67	-1.9
1,058,281	-	rsmE	LU632_RS05485	0.73	+0.3
1,058,315	+	rsmE	LU632_RS05485	0.78	+1.9
1,058,471	+				-2.4
1,058,471	+				-2.2
1,058,472	-				+0.6
1,058,472	-				-1.3
1,058,573	+				+0.0
1,058,574	-				-2.2
1,058,574	-				-1.2
1,058,574	-				-0.0
1,058,576	-				-0.2
1,058,696	+	endA	LU632_RS05490	0.20	+0.2
1,058,696	+	endA	LU632_RS05490	0.20	+0.4
1,058,696	+	endA	LU632_RS05490	0.20	-0.6
1,058,696	+	endA	LU632_RS05490	0.20	-0.1
1,058,696	+	endA	LU632_RS05490	0.20	-1.2
1,058,697	-	endA	LU632_RS05490	0.20	+1.0
1,058,697	-	endA	LU632_RS05490	0.20	+1.1
1,058,773	+	endA	LU632_RS05490	0.31	-1.2
1,058,809	-	endA	LU632_RS05490	0.36	+0.4
1,058,838	+	endA	LU632_RS05490	0.40	-1.7
1,058,842	+	endA	LU632_RS05490	0.41	-0.1
1,058,843	-	endA	LU632_RS05490	0.41	-3.9
1,058,843	-	endA	LU632_RS05490	0.41	+0.7
1,058,894	+	endA	LU632_RS05490	0.48	+0.4
1,058,907	-	endA	LU632_RS05490	0.50	-0.6
1,059,111	+	endA	LU632_RS05490	0.78	-0.1
1,059,111	+	endA	LU632_RS05490	0.78	-1.1
1,059,111	+	endA	LU632_RS05490	0.78	+0.4
1,059,111	+	endA	LU632_RS05490	0.78	+0.4
1,059,112	-	endA	LU632_RS05490	0.78	-0.8
1,059,232	+				+1.2
1,059,239	-				+1.3
1,059,239	-				+0.4
1,059,266	-				+0.2
1,059,266	-				-0.6
1,059,266	-				-0.9
1,059,274	+				+0.4
1,059,285	+				+0.4
1,059,285	+				+0.2
1,059,286	-				-2.2
1,059,302	+				-1.9