Experiment: Experiment:TE2, Cucumber 6 Petiole 1 (TE2-S-C6-P1)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LU632_RS05060 and LU632_RS05065 are separated by 0 nucleotides LU632_RS05065 and LU632_RS05070 are separated by 56 nucleotides
LU632_RS05060: LU632_RS05060 - integrase domain-containing protein, at 986,288 to 987,345
_RS05060
LU632_RS05065: LU632_RS05065 - helix-turn-helix domain-containing protein, at 987,346 to 987,633
_RS05065
LU632_RS05070: LU632_RS05070 - IS481 family transposase, at 987,690 to 988,730
_RS05070
Position (kb) 987
988 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4
5 at 986.431 kb on + strand, within LU632_RS05060 at 986.432 kb on - strand, within LU632_RS05060 at 986.432 kb on - strand, within LU632_RS05060 at 986.502 kb on + strand, within LU632_RS05060 at 986.519 kb on - strand, within LU632_RS05060 at 986.543 kb on + strand, within LU632_RS05060 at 986.543 kb on + strand, within LU632_RS05060 at 986.641 kb on - strand, within LU632_RS05060 at 986.703 kb on - strand, within LU632_RS05060 at 986.796 kb on + strand, within LU632_RS05060 at 986.796 kb on + strand, within LU632_RS05060 at 986.806 kb on - strand, within LU632_RS05060 at 986.823 kb on + strand, within LU632_RS05060 at 986.965 kb on - strand, within LU632_RS05060 at 986.965 kb on - strand, within LU632_RS05060 at 987.073 kb on + strand, within LU632_RS05060 at 987.074 kb on - strand, within LU632_RS05060 at 987.128 kb on + strand, within LU632_RS05060 at 987.129 kb on - strand, within LU632_RS05060 at 987.144 kb on + strand, within LU632_RS05060 at 987.145 kb on - strand, within LU632_RS05060 at 987.149 kb on + strand, within LU632_RS05060 at 987.150 kb on - strand, within LU632_RS05060 at 987.192 kb on - strand, within LU632_RS05060 at 987.197 kb on - strand, within LU632_RS05060 at 987.202 kb on + strand, within LU632_RS05060 at 987.203 kb on - strand, within LU632_RS05060 at 987.203 kb on - strand, within LU632_RS05060 at 987.228 kb on + strand, within LU632_RS05060 at 987.229 kb on - strand, within LU632_RS05060 at 987.344 kb on - strand at 987.351 kb on - strand at 987.356 kb on + strand at 987.375 kb on - strand, within LU632_RS05065 at 987.375 kb on - strand, within LU632_RS05065 at 987.638 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Experiment:TE2, Cucumber 6 Petiole 1 (TE2-S-C6-P1) remove 986,431 + LU632_RS05060 0.14 +0.9 986,432 - LU632_RS05060 0.14 -1.2 986,432 - LU632_RS05060 0.14 +2.8 986,502 + LU632_RS05060 0.20 -1.1 986,519 - LU632_RS05060 0.22 +4.2 986,543 + LU632_RS05060 0.24 +1.4 986,543 + LU632_RS05060 0.24 +0.5 986,641 - LU632_RS05060 0.33 +1.3 986,703 - LU632_RS05060 0.39 +0.1 986,796 + LU632_RS05060 0.48 -3.7 986,796 + LU632_RS05060 0.48 -1.2 986,806 - LU632_RS05060 0.49 +4.1 986,823 + LU632_RS05060 0.51 -2.4 986,965 - LU632_RS05060 0.64 -1.7 986,965 - LU632_RS05060 0.64 -2.1 987,073 + LU632_RS05060 0.74 +0.4 987,074 - LU632_RS05060 0.74 -1.0 987,128 + LU632_RS05060 0.79 -1.4 987,129 - LU632_RS05060 0.79 +0.1 987,144 + LU632_RS05060 0.81 -0.6 987,145 - LU632_RS05060 0.81 -0.6 987,149 + LU632_RS05060 0.81 +0.6 987,150 - LU632_RS05060 0.81 +1.0 987,192 - LU632_RS05060 0.85 +1.0 987,197 - LU632_RS05060 0.86 +0.1 987,202 + LU632_RS05060 0.86 -1.1 987,203 - LU632_RS05060 0.86 +0.0 987,203 - LU632_RS05060 0.86 +0.4 987,228 + LU632_RS05060 0.89 +0.0 987,229 - LU632_RS05060 0.89 -3.7 987,344 - +2.8 987,351 - -2.1 987,356 + -0.6 987,375 - LU632_RS05065 0.10 +4.8 987,375 - LU632_RS05065 0.10 +0.4 987,638 - -1.1
Or see this region's nucleotide sequence