Experiment: Experiment:TE2, Cucumber 6 Petiole 1 (TE2-S-C6-P1)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LU632_RS04685 and LU632_RS04690 are separated by 6 nucleotides LU632_RS04690 and LU632_RS04695 are separated by 161 nucleotides LU632_RS04695 and LU632_RS04700 are separated by 2 nucleotides
LU632_RS04685: LU632_RS04685 - universal stress protein, at 917,724 to 918,089
_RS04685
LU632_RS04690: LU632_RS04690 - IclR family transcriptional regulator, at 918,096 to 918,878
_RS04690
LU632_RS04695: LU632_RS04695 - MFS transporter, at 919,040 to 920,632
_RS04695
LU632_RS04700: LU632_RS04700 - HlyD family secretion protein, at 920,635 to 921,663
_RS04700
Position (kb) 919
920
921 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 918.120 kb on + strand at 918.207 kb on + strand, within LU632_RS04690 at 918.231 kb on + strand, within LU632_RS04690 at 918.353 kb on + strand, within LU632_RS04690 at 918.354 kb on - strand, within LU632_RS04690 at 918.508 kb on + strand, within LU632_RS04690 at 918.508 kb on + strand, within LU632_RS04690 at 918.508 kb on + strand, within LU632_RS04690 at 918.508 kb on + strand, within LU632_RS04690 at 918.509 kb on - strand, within LU632_RS04690 at 918.509 kb on - strand, within LU632_RS04690 at 918.640 kb on - strand, within LU632_RS04690 at 918.889 kb on + strand at 918.890 kb on - strand at 918.890 kb on - strand at 918.911 kb on + strand at 918.931 kb on + strand at 918.932 kb on - strand at 918.932 kb on - strand at 918.975 kb on - strand at 918.975 kb on - strand at 918.977 kb on + strand at 919.039 kb on + strand at 919.054 kb on + strand at 919.073 kb on - strand at 919.105 kb on - strand at 919.105 kb on - strand at 919.151 kb on - strand at 919.152 kb on + strand at 919.152 kb on + strand at 919.153 kb on - strand at 919.153 kb on - strand at 919.153 kb on - strand at 919.153 kb on - strand at 919.153 kb on - strand at 919.282 kb on - strand, within LU632_RS04695 at 919.387 kb on + strand, within LU632_RS04695 at 919.387 kb on + strand, within LU632_RS04695 at 919.483 kb on + strand, within LU632_RS04695 at 919.484 kb on - strand, within LU632_RS04695 at 919.505 kb on - strand, within LU632_RS04695 at 919.505 kb on - strand, within LU632_RS04695 at 919.512 kb on + strand, within LU632_RS04695 at 919.659 kb on + strand, within LU632_RS04695 at 919.659 kb on + strand, within LU632_RS04695 at 919.659 kb on + strand, within LU632_RS04695 at 919.798 kb on - strand, within LU632_RS04695 at 919.798 kb on - strand, within LU632_RS04695 at 919.798 kb on - strand, within LU632_RS04695 at 919.798 kb on - strand, within LU632_RS04695 at 919.801 kb on + strand, within LU632_RS04695 at 919.802 kb on - strand, within LU632_RS04695 at 919.802 kb on - strand, within LU632_RS04695 at 919.831 kb on + strand, within LU632_RS04695 at 919.890 kb on + strand, within LU632_RS04695 at 919.890 kb on + strand, within LU632_RS04695 at 919.920 kb on + strand, within LU632_RS04695 at 919.932 kb on - strand, within LU632_RS04695 at 919.995 kb on + strand, within LU632_RS04695 at 920.019 kb on + strand, within LU632_RS04695 at 920.085 kb on + strand, within LU632_RS04695 at 920.086 kb on - strand, within LU632_RS04695 at 920.114 kb on + strand, within LU632_RS04695 at 920.114 kb on + strand, within LU632_RS04695 at 920.114 kb on + strand, within LU632_RS04695 at 920.114 kb on + strand, within LU632_RS04695 at 920.114 kb on + strand, within LU632_RS04695 at 920.114 kb on + strand, within LU632_RS04695 at 920.115 kb on - strand, within LU632_RS04695 at 920.115 kb on - strand, within LU632_RS04695 at 920.115 kb on - strand, within LU632_RS04695 at 920.115 kb on - strand, within LU632_RS04695 at 920.118 kb on + strand, within LU632_RS04695 at 920.119 kb on - strand, within LU632_RS04695 at 920.261 kb on - strand, within LU632_RS04695 at 920.344 kb on + strand, within LU632_RS04695 at 920.345 kb on - strand, within LU632_RS04695 at 920.345 kb on - strand, within LU632_RS04695 at 920.350 kb on - strand, within LU632_RS04695 at 920.366 kb on - strand, within LU632_RS04695 at 920.380 kb on + strand, within LU632_RS04695 at 920.381 kb on - strand, within LU632_RS04695 at 920.381 kb on - strand, within LU632_RS04695 at 920.381 kb on - strand, within LU632_RS04695 at 920.416 kb on + strand, within LU632_RS04695 at 920.417 kb on - strand, within LU632_RS04695 at 920.460 kb on + strand, within LU632_RS04695 at 920.470 kb on + strand, within LU632_RS04695 at 920.474 kb on - strand at 920.478 kb on + strand at 920.519 kb on + strand at 920.519 kb on + strand at 920.519 kb on + strand at 920.519 kb on + strand at 920.520 kb on - strand at 920.604 kb on + strand at 920.604 kb on + strand at 920.605 kb on - strand at 920.605 kb on - strand at 920.631 kb on - strand at 920.661 kb on + strand at 920.663 kb on + strand at 920.664 kb on - strand at 920.681 kb on + strand at 920.802 kb on + strand, within LU632_RS04700 at 920.803 kb on - strand, within LU632_RS04700 at 920.803 kb on - strand, within LU632_RS04700 at 920.803 kb on - strand, within LU632_RS04700 at 920.826 kb on + strand, within LU632_RS04700 at 920.913 kb on - strand, within LU632_RS04700 at 920.925 kb on - strand, within LU632_RS04700 at 920.974 kb on - strand, within LU632_RS04700 at 920.974 kb on - strand, within LU632_RS04700 at 921.022 kb on + strand, within LU632_RS04700 at 921.023 kb on - strand, within LU632_RS04700 at 921.023 kb on - strand, within LU632_RS04700 at 921.105 kb on + strand, within LU632_RS04700 at 921.109 kb on - strand, within LU632_RS04700 at 921.109 kb on - strand, within LU632_RS04700 at 921.195 kb on - strand, within LU632_RS04700 at 921.213 kb on + strand, within LU632_RS04700 at 921.213 kb on + strand, within LU632_RS04700 at 921.213 kb on + strand, within LU632_RS04700 at 921.263 kb on - strand, within LU632_RS04700 at 921.376 kb on + strand, within LU632_RS04700 at 921.376 kb on + strand, within LU632_RS04700 at 921.376 kb on + strand, within LU632_RS04700 at 921.380 kb on + strand, within LU632_RS04700 at 921.380 kb on + strand, within LU632_RS04700 at 921.381 kb on - strand, within LU632_RS04700 at 921.381 kb on - strand, within LU632_RS04700
Per-strain Table
Position Strand Gene LocusTag Fraction Experiment:TE2, Cucumber 6 Petiole 1 (TE2-S-C6-P1) remove 918,120 + +0.8 918,207 + LU632_RS04690 0.14 -0.5 918,231 + LU632_RS04690 0.17 -0.2 918,353 + LU632_RS04690 0.33 -2.7 918,354 - LU632_RS04690 0.33 +0.3 918,508 + LU632_RS04690 0.53 +1.4 918,508 + LU632_RS04690 0.53 -2.2 918,508 + LU632_RS04690 0.53 -0.5 918,508 + LU632_RS04690 0.53 -1.5 918,509 - LU632_RS04690 0.53 +1.8 918,509 - LU632_RS04690 0.53 +0.1 918,640 - LU632_RS04690 0.69 +0.4 918,889 + +2.7 918,890 - -0.9 918,890 - +1.0 918,911 + -2.3 918,931 + +1.5 918,932 - +0.1 918,932 - -0.5 918,975 - +1.7 918,975 - -1.2 918,977 + -2.1 919,039 + -1.1 919,054 + -2.9 919,073 - -0.3 919,105 - -0.0 919,105 - +1.4 919,151 - +1.0 919,152 + +2.3 919,152 + +0.5 919,153 - -1.1 919,153 - +0.2 919,153 - +1.7 919,153 - +0.6 919,153 - +1.7 919,282 - LU632_RS04695 0.15 -2.5 919,387 + LU632_RS04695 0.22 -1.0 919,387 + LU632_RS04695 0.22 -1.9 919,483 + LU632_RS04695 0.28 -0.2 919,484 - LU632_RS04695 0.28 -1.1 919,505 - LU632_RS04695 0.29 -0.5 919,505 - LU632_RS04695 0.29 -1.5 919,512 + LU632_RS04695 0.30 -0.5 919,659 + LU632_RS04695 0.39 +1.0 919,659 + LU632_RS04695 0.39 -3.5 919,659 + LU632_RS04695 0.39 -0.5 919,798 - LU632_RS04695 0.48 -0.5 919,798 - LU632_RS04695 0.48 -0.3 919,798 - LU632_RS04695 0.48 +0.2 919,798 - LU632_RS04695 0.48 -0.8 919,801 + LU632_RS04695 0.48 +0.6 919,802 - LU632_RS04695 0.48 -0.5 919,802 - LU632_RS04695 0.48 -1.1 919,831 + LU632_RS04695 0.50 +1.9 919,890 + LU632_RS04695 0.53 -2.1 919,890 + LU632_RS04695 0.53 -0.8 919,920 + LU632_RS04695 0.55 +0.1 919,932 - LU632_RS04695 0.56 -0.6 919,995 + LU632_RS04695 0.60 +0.5 920,019 + LU632_RS04695 0.61 +0.6 920,085 + LU632_RS04695 0.66 +2.0 920,086 - LU632_RS04695 0.66 -0.0 920,114 + LU632_RS04695 0.67 -0.5 920,114 + LU632_RS04695 0.67 -2.3 920,114 + LU632_RS04695 0.67 -2.9 920,114 + LU632_RS04695 0.67 +1.5 920,114 + LU632_RS04695 0.67 -0.8 920,114 + LU632_RS04695 0.67 +1.8 920,115 - LU632_RS04695 0.67 -1.3 920,115 - LU632_RS04695 0.67 -2.3 920,115 - LU632_RS04695 0.67 -0.0 920,115 - LU632_RS04695 0.67 +1.1 920,118 + LU632_RS04695 0.68 -1.1 920,119 - LU632_RS04695 0.68 -2.0 920,261 - LU632_RS04695 0.77 +0.0 920,344 + LU632_RS04695 0.82 +1.2 920,345 - LU632_RS04695 0.82 +0.5 920,345 - LU632_RS04695 0.82 -0.1 920,350 - LU632_RS04695 0.82 -2.3 920,366 - LU632_RS04695 0.83 +3.5 920,380 + LU632_RS04695 0.84 +0.0 920,381 - LU632_RS04695 0.84 +2.8 920,381 - LU632_RS04695 0.84 +1.1 920,381 - LU632_RS04695 0.84 -0.1 920,416 + LU632_RS04695 0.86 +0.7 920,417 - LU632_RS04695 0.86 +1.5 920,460 + LU632_RS04695 0.89 -1.9 920,470 + LU632_RS04695 0.90 -2.7 920,474 - +1.2 920,478 + +1.1 920,519 + +1.8 920,519 + +1.3 920,519 + -2.5 920,519 + +2.5 920,520 - -2.5 920,604 + -2.9 920,604 + -1.7 920,605 - -2.8 920,605 - -2.5 920,631 - +0.5 920,661 + -0.4 920,663 + -1.4 920,664 - -0.9 920,681 + +0.5 920,802 + LU632_RS04700 0.16 -1.2 920,803 - LU632_RS04700 0.16 -0.2 920,803 - LU632_RS04700 0.16 -2.1 920,803 - LU632_RS04700 0.16 +0.5 920,826 + LU632_RS04700 0.19 -2.2 920,913 - LU632_RS04700 0.27 +1.2 920,925 - LU632_RS04700 0.28 +0.0 920,974 - LU632_RS04700 0.33 -1.1 920,974 - LU632_RS04700 0.33 -2.6 921,022 + LU632_RS04700 0.38 -3.6 921,023 - LU632_RS04700 0.38 -0.5 921,023 - LU632_RS04700 0.38 +1.1 921,105 + LU632_RS04700 0.46 +0.4 921,109 - LU632_RS04700 0.46 +0.1 921,109 - LU632_RS04700 0.46 +1.5 921,195 - LU632_RS04700 0.54 -2.9 921,213 + LU632_RS04700 0.56 +0.5 921,213 + LU632_RS04700 0.56 +2.3 921,213 + LU632_RS04700 0.56 -2.1 921,263 - LU632_RS04700 0.61 +1.0 921,376 + LU632_RS04700 0.72 +0.6 921,376 + LU632_RS04700 0.72 -0.9 921,376 + LU632_RS04700 0.72 -1.1 921,380 + LU632_RS04700 0.72 -3.7 921,380 + LU632_RS04700 0.72 -0.8 921,381 - LU632_RS04700 0.72 -1.0 921,381 - LU632_RS04700 0.72 +0.4
Or see this region's nucleotide sequence