Experiment: Experiment:TE2, Cucumber 6 Petiole 1 (TE2-S-C6-P1)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LU632_RS04575 and LU632_RS04580 are separated by 89 nucleotides LU632_RS04580 and LU632_RS04585 are separated by 2 nucleotides LU632_RS04585 and LU632_RS04590 are separated by 61 nucleotides
LU632_RS04575: LU632_RS04575 - IS91 family transposase, at 896,066 to 897,289
_RS04575
LU632_RS04580: LU632_RS04580 - hypothetical protein, at 897,379 to 897,981
_RS04580
LU632_RS04585: LU632_RS04585 - contact-dependent growth inhibition system immunity protein, at 897,984 to 898,331
_RS04585
LU632_RS04590: LU632_RS04590 - IS481 family transposase, at 898,393 to 899,406
_RS04590
Position (kb) 897
898 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 897.378 kb on + strand at 897.436 kb on + strand at 897.436 kb on + strand at 897.436 kb on + strand at 897.436 kb on + strand at 897.436 kb on + strand at 897.437 kb on - strand at 897.437 kb on - strand at 897.437 kb on - strand at 897.437 kb on - strand at 897.449 kb on + strand, within LU632_RS04580 at 897.583 kb on - strand, within LU632_RS04580 at 897.583 kb on - strand, within LU632_RS04580 at 897.586 kb on - strand, within LU632_RS04580 at 897.747 kb on - strand, within LU632_RS04580 at 897.747 kb on - strand, within LU632_RS04580 at 897.747 kb on - strand, within LU632_RS04580 at 897.759 kb on + strand, within LU632_RS04580 at 897.762 kb on - strand, within LU632_RS04580 at 897.762 kb on - strand, within LU632_RS04580 at 897.762 kb on - strand, within LU632_RS04580 at 897.842 kb on + strand, within LU632_RS04580 at 897.842 kb on + strand, within LU632_RS04580 at 897.843 kb on - strand, within LU632_RS04580 at 897.843 kb on - strand, within LU632_RS04580 at 898.021 kb on + strand, within LU632_RS04585 at 898.022 kb on - strand, within LU632_RS04585 at 898.025 kb on + strand, within LU632_RS04585 at 898.025 kb on + strand, within LU632_RS04585 at 898.025 kb on + strand, within LU632_RS04585 at 898.025 kb on + strand, within LU632_RS04585 at 898.025 kb on + strand, within LU632_RS04585 at 898.026 kb on - strand, within LU632_RS04585 at 898.026 kb on - strand, within LU632_RS04585 at 898.029 kb on + strand, within LU632_RS04585 at 898.029 kb on + strand, within LU632_RS04585 at 898.030 kb on - strand, within LU632_RS04585 at 898.045 kb on - strand, within LU632_RS04585 at 898.062 kb on - strand, within LU632_RS04585 at 898.084 kb on + strand, within LU632_RS04585 at 898.119 kb on - strand, within LU632_RS04585 at 898.311 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Experiment:TE2, Cucumber 6 Petiole 1 (TE2-S-C6-P1) remove 897,378 + +1.2 897,436 + -0.1 897,436 + -0.3 897,436 + +0.5 897,436 + +2.0 897,436 + +0.3 897,437 - +1.5 897,437 - +0.9 897,437 - -0.2 897,437 - -0.3 897,449 + LU632_RS04580 0.12 -0.3 897,583 - LU632_RS04580 0.34 +0.4 897,583 - LU632_RS04580 0.34 +0.5 897,586 - LU632_RS04580 0.34 -0.5 897,747 - LU632_RS04580 0.61 +2.7 897,747 - LU632_RS04580 0.61 +0.3 897,747 - LU632_RS04580 0.61 -1.9 897,759 + LU632_RS04580 0.63 -1.0 897,762 - LU632_RS04580 0.64 +0.0 897,762 - LU632_RS04580 0.64 -0.5 897,762 - LU632_RS04580 0.64 -1.1 897,842 + LU632_RS04580 0.77 -0.5 897,842 + LU632_RS04580 0.77 +1.8 897,843 - LU632_RS04580 0.77 -0.6 897,843 - LU632_RS04580 0.77 +1.4 898,021 + LU632_RS04585 0.11 +0.5 898,022 - LU632_RS04585 0.11 +0.2 898,025 + LU632_RS04585 0.12 +0.2 898,025 + LU632_RS04585 0.12 -0.5 898,025 + LU632_RS04585 0.12 -0.1 898,025 + LU632_RS04585 0.12 +0.0 898,025 + LU632_RS04585 0.12 -2.0 898,026 - LU632_RS04585 0.12 -0.5 898,026 - LU632_RS04585 0.12 -1.5 898,029 + LU632_RS04585 0.13 -3.2 898,029 + LU632_RS04585 0.13 -1.7 898,030 - LU632_RS04585 0.13 +0.4 898,045 - LU632_RS04585 0.18 +0.0 898,062 - LU632_RS04585 0.22 +1.2 898,084 + LU632_RS04585 0.29 -1.6 898,119 - LU632_RS04585 0.39 -2.7 898,311 - -1.5
Or see this region's nucleotide sequence