Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS04385

Experiment: Experiment:TE2, Cucumber 6 Petiole 1 (TE2-S-C6-P1)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Experiment:TE2, Cucumber 6 Petiole 1 (TE2-S-C6-P1)
866,210	+		LU632_RS04380	0.71	+1.6
866,211	-		LU632_RS04380	0.71	-0.5
866,392	-				-1.3
866,425	+				-4.1
866,427	+				-0.9
866,473	-				-0.1
866,473	-				-1.5
866,478	-				+0.1
866,478	-				-2.7
866,480	-				-0.5
866,517	+				-0.5
866,517	+				+0.2
866,517	+				-3.3
866,519	+				-2.5
866,519	+				+0.5
866,519	+				+1.3
866,575	+				-1.1
866,576	-				+0.3
866,582	+				+0.8
866,582	+				-1.0
866,834	+				-0.5
866,935	+				+0.2
866,935	+				+1.0
866,960	+				+2.7
866,961	-				+0.6
866,961	-				-0.0
866,965	-				-1.1
866,970	+				+0.7
866,994	-				+0.5
867,046	-				+1.8
867,115	+				+0.1
867,115	+				-0.2
867,116	-				+0.5
867,154	-				-1.3
867,173	-				+2.3
867,202	+				-1.1
867,203	-				+1.3
867,203	-				-1.0
867,206	+				-0.6
867,207	-				-1.5
867,252	+		LU632_RS04385	0.18	-0.7
867,252	+		LU632_RS04385	0.18	+0.2
867,253	-		LU632_RS04385	0.18	+0.7
867,318	-		LU632_RS04385	0.32	-1.1
867,423	+		LU632_RS04385	0.56	+1.2
867,423	+		LU632_RS04385	0.56	+1.3
867,424	-		LU632_RS04385	0.56	-1.5
867,762	-		LU632_RS04390	0.25	+1.3
868,139	-		LU632_RS04390	0.86	+1.4
868,229	+				+1.4
868,391	-		LU632_RS04395	0.29	+0.6
868,391	-		LU632_RS04395	0.29	+0.6
868,501	+		LU632_RS04395	0.51	-3.5
868,554	+		LU632_RS04395	0.62	+0.8
868,554	+		LU632_RS04395	0.62	-0.3
868,555	-		LU632_RS04395	0.63	-1.0