Experiment: Experiment:TE2, Cucumber 6 Petiole 1 (TE2-S-C6-P1)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LU632_RS04290 and LU632_RS04295 are separated by 187 nucleotides LU632_RS04295 and LU632_RS04300 are separated by 44 nucleotides LU632_RS04300 and LU632_RS04305 overlap by 9 nucleotides
LU632_RS04290: LU632_RS04290 - hypothetical protein, at 853,384 to 854,223
_RS04290
LU632_RS04295: LU632_RS04295 - IS91 family transposase, at 854,411 to 854,548
_RS04295
LU632_RS04300: LU632_RS04300 - IS3 family transposase, at 854,593 to 854,838
_RS04300
LU632_RS04305: LU632_RS04305 - DNA primase, at 854,830 to 855,231
_RS04305
Position (kb) 854
855 Strain fitness (log2 ratio) -2
-1
0
1
2 at 853.743 kb on + strand, within LU632_RS04290 at 853.744 kb on - strand, within LU632_RS04290 at 853.771 kb on + strand, within LU632_RS04290 at 853.772 kb on - strand, within LU632_RS04290 at 854.192 kb on + strand at 854.309 kb on + strand at 854.424 kb on + strand at 854.424 kb on + strand at 854.424 kb on + strand at 854.424 kb on + strand at 854.425 kb on - strand, within LU632_RS04295 at 854.425 kb on - strand, within LU632_RS04295 at 854.425 kb on - strand, within LU632_RS04295 at 854.425 kb on - strand, within LU632_RS04295 at 854.425 kb on - strand, within LU632_RS04295 at 854.425 kb on - strand, within LU632_RS04295 at 854.583 kb on + strand at 854.584 kb on - strand at 854.590 kb on + strand at 854.591 kb on - strand at 854.677 kb on - strand, within LU632_RS04300 at 854.723 kb on + strand, within LU632_RS04300 at 854.813 kb on + strand, within LU632_RS04300 at 854.814 kb on - strand at 854.994 kb on + strand, within LU632_RS04305 at 855.244 kb on - strand at 855.244 kb on - strand at 855.434 kb on - strand at 855.488 kb on - strand at 855.551 kb on - strand at 855.596 kb on - strand at 855.598 kb on + strand at 855.657 kb on - strand at 855.689 kb on + strand at 855.757 kb on + strand at 855.760 kb on + strand at 855.760 kb on + strand at 855.761 kb on - strand at 855.838 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Experiment:TE2, Cucumber 6 Petiole 1 (TE2-S-C6-P1) remove 853,743 + LU632_RS04290 0.43 -1.3 853,744 - LU632_RS04290 0.43 -0.9 853,771 + LU632_RS04290 0.46 +1.2 853,772 - LU632_RS04290 0.46 +0.7 854,192 + +0.5 854,309 + +1.4 854,424 + -2.5 854,424 + +0.5 854,424 + +2.1 854,424 + +0.5 854,425 - LU632_RS04295 0.10 -1.2 854,425 - LU632_RS04295 0.10 +0.4 854,425 - LU632_RS04295 0.10 -1.1 854,425 - LU632_RS04295 0.10 -1.3 854,425 - LU632_RS04295 0.10 -0.9 854,425 - LU632_RS04295 0.10 -0.5 854,583 + +0.4 854,584 - -0.2 854,590 + -1.5 854,591 - +0.7 854,677 - LU632_RS04300 0.34 -2.5 854,723 + LU632_RS04300 0.53 -0.8 854,813 + LU632_RS04300 0.89 +0.0 854,814 - -1.9 854,994 + LU632_RS04305 0.41 +0.4 855,244 - +2.6 855,244 - -0.7 855,434 - +0.6 855,488 - +1.2 855,551 - +1.0 855,596 - -1.5 855,598 + -2.5 855,657 - +0.5 855,689 + +0.3 855,757 + +0.5 855,760 + -1.9 855,760 + -2.1 855,761 - +1.0 855,838 + +0.7
Or see this region's nucleotide sequence