Experiment: Experiment:TE2, Cucumber 6 Petiole 1 (TE2-S-C6-P1)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LU632_RS03550 and LU632_RS03555 overlap by 4 nucleotides LU632_RS03555 and LU632_RS03560 overlap by 1 nucleotides LU632_RS03560 and LU632_RS03565 are separated by 165 nucleotides
LU632_RS03550: LU632_RS03550 - phage portal protein, at 718,077 to 719,099
_RS03550
LU632_RS03555: LU632_RS03555 - terminase family protein, at 719,096 to 719,842
_RS03555
LU632_RS03560: LU632_RS03560 - terminase ATPase subunit family protein, at 719,842 to 721,611
_RS03560
LU632_RS03565: LU632_RS03565 - GPO family capsid scaffolding protein, at 721,777 to 722,631
_RS03565
Position (kb) 719
720
721
722 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 718.849 kb on + strand, within LU632_RS03550 at 718.850 kb on - strand, within LU632_RS03550 at 718.850 kb on - strand, within LU632_RS03550 at 718.899 kb on + strand, within LU632_RS03550 at 718.899 kb on + strand, within LU632_RS03550 at 719.270 kb on + strand, within LU632_RS03555 at 719.347 kb on - strand, within LU632_RS03555 at 719.347 kb on - strand, within LU632_RS03555 at 719.347 kb on - strand, within LU632_RS03555 at 719.351 kb on - strand, within LU632_RS03555 at 719.351 kb on - strand, within LU632_RS03555 at 719.461 kb on - strand, within LU632_RS03555 at 719.592 kb on + strand, within LU632_RS03555 at 719.593 kb on - strand, within LU632_RS03555 at 719.593 kb on - strand, within LU632_RS03555 at 719.860 kb on - strand at 719.969 kb on + strand at 719.969 kb on + strand at 719.970 kb on - strand at 719.970 kb on - strand at 720.051 kb on - strand, within LU632_RS03560 at 720.203 kb on + strand, within LU632_RS03560 at 720.216 kb on - strand, within LU632_RS03560 at 720.265 kb on - strand, within LU632_RS03560 at 720.511 kb on - strand, within LU632_RS03560 at 720.600 kb on + strand, within LU632_RS03560 at 720.608 kb on - strand, within LU632_RS03560 at 720.847 kb on + strand, within LU632_RS03560 at 720.860 kb on + strand, within LU632_RS03560 at 720.860 kb on + strand, within LU632_RS03560 at 720.861 kb on - strand, within LU632_RS03560 at 720.993 kb on - strand, within LU632_RS03560 at 721.008 kb on - strand, within LU632_RS03560 at 721.021 kb on - strand, within LU632_RS03560 at 721.088 kb on + strand, within LU632_RS03560 at 721.132 kb on - strand, within LU632_RS03560 at 721.248 kb on + strand, within LU632_RS03560 at 721.594 kb on - strand at 721.649 kb on + strand at 721.649 kb on + strand at 721.843 kb on - strand at 721.879 kb on + strand, within LU632_RS03565 at 721.880 kb on - strand, within LU632_RS03565 at 722.137 kb on + strand, within LU632_RS03565 at 722.138 kb on - strand, within LU632_RS03565 at 722.188 kb on + strand, within LU632_RS03565
Per-strain Table
Position Strand Gene LocusTag Fraction Experiment:TE2, Cucumber 6 Petiole 1 (TE2-S-C6-P1) remove 718,849 + LU632_RS03550 0.75 -2.3 718,850 - LU632_RS03550 0.76 -1.7 718,850 - LU632_RS03550 0.76 +0.7 718,899 + LU632_RS03550 0.80 -2.6 718,899 + LU632_RS03550 0.80 +0.6 719,270 + LU632_RS03555 0.23 -0.3 719,347 - LU632_RS03555 0.34 +0.8 719,347 - LU632_RS03555 0.34 -1.0 719,347 - LU632_RS03555 0.34 -1.7 719,351 - LU632_RS03555 0.34 -0.4 719,351 - LU632_RS03555 0.34 -2.8 719,461 - LU632_RS03555 0.49 -0.9 719,592 + LU632_RS03555 0.66 -2.4 719,593 - LU632_RS03555 0.67 +1.6 719,593 - LU632_RS03555 0.67 +0.9 719,860 - -1.2 719,969 + -0.8 719,969 + +0.2 719,970 - +1.7 719,970 - +2.9 720,051 - LU632_RS03560 0.12 -0.0 720,203 + LU632_RS03560 0.20 -1.0 720,216 - LU632_RS03560 0.21 +1.0 720,265 - LU632_RS03560 0.24 -1.9 720,511 - LU632_RS03560 0.38 -0.3 720,600 + LU632_RS03560 0.43 -0.2 720,608 - LU632_RS03560 0.43 +1.7 720,847 + LU632_RS03560 0.57 +0.6 720,860 + LU632_RS03560 0.58 +0.2 720,860 + LU632_RS03560 0.58 -0.8 720,861 - LU632_RS03560 0.58 +0.0 720,993 - LU632_RS03560 0.65 +0.3 721,008 - LU632_RS03560 0.66 +0.9 721,021 - LU632_RS03560 0.67 +0.1 721,088 + LU632_RS03560 0.70 +0.6 721,132 - LU632_RS03560 0.73 -0.1 721,248 + LU632_RS03560 0.79 +0.9 721,594 - +2.8 721,649 + -0.2 721,649 + +0.1 721,843 - +0.8 721,879 + LU632_RS03565 0.12 -2.6 721,880 - LU632_RS03565 0.12 -0.3 722,137 + LU632_RS03565 0.42 +1.1 722,138 - LU632_RS03565 0.42 +0.5 722,188 + LU632_RS03565 0.48 -0.9
Or see this region's nucleotide sequence