Experiment: Experiment:TE2, Cucumber 6 Petiole 1 (TE2-S-C6-P1)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt thiP and thiB overlap by 25 nucleotides thiB and sgrR are separated by 174 nucleotides
LU632_RS02830: thiP - thiamine/thiamine pyrophosphate ABC transporter permease ThiP, at 575,332 to 576,942
thiP
LU632_RS02835: thiB - thiamine ABC transporter substrate binding subunit, at 576,918 to 577,904
thiB
LU632_RS02840: sgrR - HTH-type transcriptional regulator SgrR, at 578,079 to 579,740
sgrR
Position (kb) 576
577
578 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 575.947 kb on + strand, within thiP at 575.947 kb on + strand, within thiP at 575.977 kb on + strand, within thiP at 575.980 kb on + strand, within thiP at 575.981 kb on - strand, within thiP at 576.088 kb on + strand, within thiP at 576.466 kb on + strand, within thiP at 576.467 kb on - strand, within thiP at 576.502 kb on + strand, within thiP at 576.503 kb on - strand, within thiP at 576.548 kb on + strand, within thiP at 576.549 kb on - strand, within thiP at 576.892 kb on + strand at 576.892 kb on + strand at 576.892 kb on + strand at 576.893 kb on - strand at 576.893 kb on - strand at 576.915 kb on + strand at 576.916 kb on - strand at 576.919 kb on + strand at 577.057 kb on + strand, within thiB at 577.058 kb on - strand, within thiB at 577.176 kb on + strand, within thiB at 577.177 kb on - strand, within thiB at 577.177 kb on - strand, within thiB at 577.201 kb on - strand, within thiB at 577.241 kb on - strand, within thiB at 577.256 kb on + strand, within thiB at 577.256 kb on + strand, within thiB at 577.256 kb on + strand, within thiB at 577.257 kb on - strand, within thiB at 577.258 kb on + strand, within thiB at 577.258 kb on + strand, within thiB at 577.258 kb on + strand, within thiB at 577.258 kb on + strand, within thiB at 577.259 kb on - strand, within thiB at 577.300 kb on + strand, within thiB at 577.511 kb on + strand, within thiB at 577.511 kb on + strand, within thiB at 577.511 kb on + strand, within thiB at 577.516 kb on + strand, within thiB at 577.516 kb on + strand, within thiB at 577.516 kb on + strand, within thiB at 577.517 kb on - strand, within thiB at 577.537 kb on + strand, within thiB at 577.741 kb on + strand, within thiB at 577.741 kb on + strand, within thiB at 577.822 kb on + strand at 577.823 kb on - strand at 577.823 kb on - strand at 577.823 kb on - strand at 577.823 kb on - strand at 577.823 kb on - strand at 577.829 kb on - strand at 578.047 kb on - strand at 578.051 kb on + strand at 578.052 kb on - strand at 578.156 kb on + strand at 578.156 kb on + strand at 578.156 kb on + strand at 578.156 kb on + strand at 578.157 kb on - strand at 578.157 kb on - strand at 578.160 kb on + strand at 578.161 kb on - strand at 578.161 kb on - strand at 578.175 kb on + strand at 578.176 kb on - strand at 578.225 kb on + strand at 578.416 kb on + strand, within sgrR at 578.693 kb on + strand, within sgrR at 578.693 kb on + strand, within sgrR at 578.731 kb on + strand, within sgrR at 578.732 kb on - strand, within sgrR at 578.804 kb on - strand, within sgrR at 578.876 kb on - strand, within sgrR
Per-strain Table
Position Strand Gene LocusTag Fraction Experiment:TE2, Cucumber 6 Petiole 1 (TE2-S-C6-P1) remove 575,947 + thiP LU632_RS02830 0.38 -1.6 575,947 + thiP LU632_RS02830 0.38 +1.1 575,977 + thiP LU632_RS02830 0.40 +0.7 575,980 + thiP LU632_RS02830 0.40 -0.2 575,981 - thiP LU632_RS02830 0.40 +0.4 576,088 + thiP LU632_RS02830 0.47 -0.8 576,466 + thiP LU632_RS02830 0.70 +0.3 576,467 - thiP LU632_RS02830 0.70 -0.8 576,502 + thiP LU632_RS02830 0.73 +3.0 576,503 - thiP LU632_RS02830 0.73 -0.5 576,548 + thiP LU632_RS02830 0.75 -0.8 576,549 - thiP LU632_RS02830 0.76 -0.1 576,892 + -1.5 576,892 + -0.3 576,892 + +1.7 576,893 - -0.2 576,893 - +0.6 576,915 + -0.5 576,916 - -0.2 576,919 + +0.8 577,057 + thiB LU632_RS02835 0.14 -1.5 577,058 - thiB LU632_RS02835 0.14 -2.5 577,176 + thiB LU632_RS02835 0.26 +1.2 577,177 - thiB LU632_RS02835 0.26 +0.8 577,177 - thiB LU632_RS02835 0.26 -1.3 577,201 - thiB LU632_RS02835 0.29 -2.7 577,241 - thiB LU632_RS02835 0.33 -0.3 577,256 + thiB LU632_RS02835 0.34 -0.9 577,256 + thiB LU632_RS02835 0.34 -0.6 577,256 + thiB LU632_RS02835 0.34 -0.2 577,257 - thiB LU632_RS02835 0.34 +0.3 577,258 + thiB LU632_RS02835 0.34 -0.6 577,258 + thiB LU632_RS02835 0.34 +0.7 577,258 + thiB LU632_RS02835 0.34 -0.1 577,258 + thiB LU632_RS02835 0.34 -1.4 577,259 - thiB LU632_RS02835 0.35 +0.4 577,300 + thiB LU632_RS02835 0.39 -1.9 577,511 + thiB LU632_RS02835 0.60 -1.1 577,511 + thiB LU632_RS02835 0.60 +0.1 577,511 + thiB LU632_RS02835 0.60 -0.6 577,516 + thiB LU632_RS02835 0.61 -2.8 577,516 + thiB LU632_RS02835 0.61 +2.3 577,516 + thiB LU632_RS02835 0.61 -0.0 577,517 - thiB LU632_RS02835 0.61 -1.0 577,537 + thiB LU632_RS02835 0.63 -0.5 577,741 + thiB LU632_RS02835 0.83 -0.5 577,741 + thiB LU632_RS02835 0.83 +2.7 577,822 + +0.8 577,823 - -0.8 577,823 - -0.3 577,823 - -1.2 577,823 - -0.7 577,823 - +1.0 577,829 - -0.7 578,047 - -2.3 578,051 + +0.9 578,052 - +2.7 578,156 + -0.2 578,156 + +0.5 578,156 + +0.1 578,156 + -0.7 578,157 - -1.3 578,157 - -0.5 578,160 + -0.3 578,161 - -1.9 578,161 - +0.5 578,175 + +0.4 578,176 - -3.3 578,225 + -0.9 578,416 + sgrR LU632_RS02840 0.20 +1.0 578,693 + sgrR LU632_RS02840 0.37 -2.7 578,693 + sgrR LU632_RS02840 0.37 +0.6 578,731 + sgrR LU632_RS02840 0.39 -1.9 578,732 - sgrR LU632_RS02840 0.39 -0.3 578,804 - sgrR LU632_RS02840 0.44 +0.2 578,876 - sgrR LU632_RS02840 0.48 -0.3
Or see this region's nucleotide sequence