Experiment: Experiment:TE2, Cucumber 6 Petiole 1 (TE2-S-C6-P1)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt nadR and LU632_RS02560 are separated by 23 nucleotides LU632_RS02560 and ettA are separated by 317 nucleotides
LU632_RS02555: nadR - multifunctional transcriptional regulator/nicotinamide-nucleotide adenylyltransferase/ribosylnicotinamide kinase NadR, at 507,760 to 508,986
nadR
LU632_RS02560: LU632_RS02560 - zinc-binding dehydrogenase, at 509,010 to 509,411
_RS02560
LU632_RS02565: ettA - energy-dependent translational throttle protein EttA, at 509,729 to 511,396
ettA
Position (kb) 509
510 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 508.023 kb on + strand, within nadR at 508.023 kb on + strand, within nadR at 508.044 kb on + strand, within nadR at 508.152 kb on + strand, within nadR at 508.174 kb on - strand, within nadR at 508.286 kb on - strand, within nadR at 508.287 kb on + strand, within nadR at 508.384 kb on - strand, within nadR at 508.420 kb on + strand, within nadR at 508.506 kb on - strand, within nadR at 508.507 kb on - strand, within nadR at 508.524 kb on + strand, within nadR at 508.525 kb on - strand, within nadR at 508.527 kb on + strand, within nadR at 508.547 kb on + strand, within nadR at 508.559 kb on - strand, within nadR at 508.601 kb on - strand, within nadR at 508.681 kb on - strand, within nadR at 508.681 kb on - strand, within nadR at 508.800 kb on + strand, within nadR at 508.800 kb on + strand, within nadR at 508.800 kb on + strand, within nadR at 508.843 kb on - strand, within nadR at 508.854 kb on + strand, within nadR at 508.897 kb on - strand at 508.926 kb on + strand at 508.930 kb on + strand at 508.930 kb on + strand at 508.930 kb on - strand at 508.931 kb on - strand at 509.196 kb on + strand, within LU632_RS02560 at 509.197 kb on - strand, within LU632_RS02560 at 509.248 kb on - strand, within LU632_RS02560 at 509.314 kb on - strand, within LU632_RS02560 at 509.363 kb on + strand, within LU632_RS02560 at 509.365 kb on + strand, within LU632_RS02560 at 509.443 kb on + strand at 509.443 kb on + strand at 509.443 kb on + strand at 509.444 kb on - strand at 509.485 kb on + strand at 509.533 kb on + strand at 509.537 kb on + strand at 509.537 kb on + strand at 509.537 kb on + strand at 509.637 kb on + strand at 509.638 kb on - strand at 509.660 kb on + strand at 509.660 kb on + strand at 509.661 kb on - strand at 509.676 kb on - strand at 509.731 kb on - strand at 509.731 kb on - strand at 509.753 kb on - strand at 509.753 kb on - strand at 509.755 kb on + strand at 509.756 kb on - strand at 509.798 kb on - strand at 509.867 kb on - strand at 509.879 kb on - strand at 510.103 kb on + strand, within ettA at 510.185 kb on + strand, within ettA at 510.199 kb on + strand, within ettA at 510.199 kb on + strand, within ettA at 510.200 kb on - strand, within ettA at 510.407 kb on - strand, within ettA
Per-strain Table
Position Strand Gene LocusTag Fraction Experiment:TE2, Cucumber 6 Petiole 1 (TE2-S-C6-P1) remove 508,023 + nadR LU632_RS02555 0.21 -0.3 508,023 + nadR LU632_RS02555 0.21 -2.6 508,044 + nadR LU632_RS02555 0.23 -2.0 508,152 + nadR LU632_RS02555 0.32 -1.5 508,174 - nadR LU632_RS02555 0.34 +0.0 508,286 - nadR LU632_RS02555 0.43 -1.9 508,287 + nadR LU632_RS02555 0.43 -2.5 508,384 - nadR LU632_RS02555 0.51 -2.3 508,420 + nadR LU632_RS02555 0.54 -3.2 508,506 - nadR LU632_RS02555 0.61 -3.5 508,507 - nadR LU632_RS02555 0.61 -3.6 508,524 + nadR LU632_RS02555 0.62 -2.1 508,525 - nadR LU632_RS02555 0.62 -1.0 508,527 + nadR LU632_RS02555 0.63 +0.7 508,547 + nadR LU632_RS02555 0.64 -0.3 508,559 - nadR LU632_RS02555 0.65 -2.1 508,601 - nadR LU632_RS02555 0.69 -1.2 508,681 - nadR LU632_RS02555 0.75 -0.7 508,681 - nadR LU632_RS02555 0.75 -2.1 508,800 + nadR LU632_RS02555 0.85 -1.2 508,800 + nadR LU632_RS02555 0.85 -2.6 508,800 + nadR LU632_RS02555 0.85 -1.9 508,843 - nadR LU632_RS02555 0.88 -1.3 508,854 + nadR LU632_RS02555 0.89 -0.7 508,897 - -1.1 508,926 + +0.7 508,930 + -2.3 508,930 + -2.0 508,930 - +0.3 508,931 - -2.9 509,196 + LU632_RS02560 0.46 +0.6 509,197 - LU632_RS02560 0.47 -2.1 509,248 - LU632_RS02560 0.59 +1.9 509,314 - LU632_RS02560 0.76 +0.2 509,363 + LU632_RS02560 0.88 +1.9 509,365 + LU632_RS02560 0.88 +0.2 509,443 + +1.7 509,443 + +0.8 509,443 + +0.9 509,444 - +0.1 509,485 + +0.2 509,533 + +0.5 509,537 + +0.5 509,537 + -1.6 509,537 + -0.7 509,637 + -1.9 509,638 - +0.6 509,660 + -1.6 509,660 + +0.6 509,661 - +0.4 509,676 - -1.7 509,731 - -0.2 509,731 - -0.2 509,753 - +0.7 509,753 - +0.8 509,755 + -1.1 509,756 - +1.6 509,798 - +1.5 509,867 - +0.7 509,879 - -1.2 510,103 + ettA LU632_RS02565 0.22 +3.7 510,185 + ettA LU632_RS02565 0.27 -1.6 510,199 + ettA LU632_RS02565 0.28 -0.6 510,199 + ettA LU632_RS02565 0.28 -1.1 510,200 - ettA LU632_RS02565 0.28 +1.1 510,407 - ettA LU632_RS02565 0.41 -0.1
Or see this region's nucleotide sequence