Experiment: Experiment:TE2, Cucumber 6 Petiole 1 (TE2-S-C6-P1)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt yraP and diaA are separated by 10 nucleotides diaA and LU632_RS02220 are separated by 32 nucleotides LU632_RS02220 and LU632_RS02225 overlap by 43 nucleotides
LU632_RS02210: yraP - divisome-associated lipoprotein YraP, at 437,284 to 437,856
yraP
LU632_RS02215: diaA - DnaA initiator-associating protein DiaA, at 437,867 to 438,457
diaA
LU632_RS02220: LU632_RS02220 - YraN family protein, at 438,490 to 438,882
_RS02220
LU632_RS02225: LU632_RS02225 - penicillin-binding protein activator, at 438,840 to 440,888
_RS02225
Position (kb) 438
439 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 437.537 kb on + strand, within yraP at 437.538 kb on - strand, within yraP at 437.683 kb on - strand, within yraP at 437.683 kb on - strand, within yraP at 437.683 kb on - strand, within yraP at 437.816 kb on - strand at 437.830 kb on + strand at 437.858 kb on + strand at 437.859 kb on - strand at 437.932 kb on + strand, within diaA at 437.932 kb on + strand, within diaA at 437.932 kb on + strand, within diaA at 437.933 kb on - strand, within diaA at 437.996 kb on + strand, within diaA at 437.996 kb on + strand, within diaA at 437.997 kb on - strand, within diaA at 437.997 kb on - strand, within diaA at 438.049 kb on + strand, within diaA at 438.083 kb on + strand, within diaA at 438.084 kb on - strand, within diaA at 438.098 kb on - strand, within diaA at 438.112 kb on + strand, within diaA at 438.211 kb on + strand, within diaA at 438.331 kb on + strand, within diaA at 438.419 kb on + strand at 438.419 kb on + strand at 438.420 kb on - strand at 438.420 kb on - strand at 438.422 kb on - strand at 438.422 kb on - strand at 438.442 kb on + strand at 438.547 kb on + strand, within LU632_RS02220 at 438.548 kb on - strand, within LU632_RS02220 at 438.548 kb on - strand, within LU632_RS02220 at 438.602 kb on - strand, within LU632_RS02220 at 438.667 kb on + strand, within LU632_RS02220 at 438.668 kb on - strand, within LU632_RS02220 at 438.676 kb on - strand, within LU632_RS02220 at 438.714 kb on + strand, within LU632_RS02220
Per-strain Table
Position Strand Gene LocusTag Fraction Experiment:TE2, Cucumber 6 Petiole 1 (TE2-S-C6-P1) remove 437,537 + yraP LU632_RS02210 0.44 +0.7 437,538 - yraP LU632_RS02210 0.44 -1.3 437,683 - yraP LU632_RS02210 0.70 -3.0 437,683 - yraP LU632_RS02210 0.70 -0.8 437,683 - yraP LU632_RS02210 0.70 -3.3 437,816 - -0.3 437,830 + +0.9 437,858 + +0.7 437,859 - -2.2 437,932 + diaA LU632_RS02215 0.11 -0.3 437,932 + diaA LU632_RS02215 0.11 -3.6 437,932 + diaA LU632_RS02215 0.11 -0.6 437,933 - diaA LU632_RS02215 0.11 -0.3 437,996 + diaA LU632_RS02215 0.22 -0.7 437,996 + diaA LU632_RS02215 0.22 -1.9 437,997 - diaA LU632_RS02215 0.22 -0.3 437,997 - diaA LU632_RS02215 0.22 +1.2 438,049 + diaA LU632_RS02215 0.31 +0.7 438,083 + diaA LU632_RS02215 0.37 -0.9 438,084 - diaA LU632_RS02215 0.37 +1.0 438,098 - diaA LU632_RS02215 0.39 -0.9 438,112 + diaA LU632_RS02215 0.41 -0.5 438,211 + diaA LU632_RS02215 0.58 -1.4 438,331 + diaA LU632_RS02215 0.79 -0.9 438,419 + -1.1 438,419 + -2.7 438,420 - +2.1 438,420 - -0.2 438,422 - +0.7 438,422 - +0.6 438,442 + -3.7 438,547 + LU632_RS02220 0.15 +3.7 438,548 - LU632_RS02220 0.15 +1.8 438,548 - LU632_RS02220 0.15 -2.3 438,602 - LU632_RS02220 0.28 -0.1 438,667 + LU632_RS02220 0.45 +2.0 438,668 - LU632_RS02220 0.45 -1.8 438,676 - LU632_RS02220 0.47 -1.9 438,714 + LU632_RS02220 0.57 +0.7
Or see this region's nucleotide sequence