Experiment: Experiment:TE2, Cucumber 6 Petiole 1 (TE2-S-C6-P1)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LU632_RS02200 and LU632_RS02205 are separated by 148 nucleotides LU632_RS02205 and yraP are separated by 85 nucleotides yraP and diaA are separated by 10 nucleotides
LU632_RS02200: LU632_RS02200 - lactonase family protein, at 433,994 to 435,139
_RS02200
LU632_RS02205: LU632_RS02205 - BglG family transcription antiterminator, at 435,288 to 437,198
_RS02205
LU632_RS02210: yraP - divisome-associated lipoprotein YraP, at 437,284 to 437,856
yraP
LU632_RS02215: diaA - DnaA initiator-associating protein DiaA, at 437,867 to 438,457
diaA
Position (kb) 435
436
437
438 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 434.327 kb on + strand, within LU632_RS02200 at 434.328 kb on - strand, within LU632_RS02200 at 434.372 kb on + strand, within LU632_RS02200 at 434.373 kb on - strand, within LU632_RS02200 at 434.598 kb on - strand, within LU632_RS02200 at 434.741 kb on - strand, within LU632_RS02200 at 434.761 kb on + strand, within LU632_RS02200 at 434.858 kb on - strand, within LU632_RS02200 at 434.876 kb on + strand, within LU632_RS02200 at 434.876 kb on + strand, within LU632_RS02200 at 434.897 kb on - strand, within LU632_RS02200 at 434.975 kb on - strand, within LU632_RS02200 at 435.004 kb on + strand, within LU632_RS02200 at 435.014 kb on + strand, within LU632_RS02200 at 435.015 kb on - strand, within LU632_RS02200 at 435.096 kb on - strand at 435.229 kb on - strand at 435.570 kb on + strand, within LU632_RS02205 at 435.571 kb on - strand, within LU632_RS02205 at 435.571 kb on - strand, within LU632_RS02205 at 435.928 kb on - strand, within LU632_RS02205 at 436.109 kb on + strand, within LU632_RS02205 at 436.182 kb on + strand, within LU632_RS02205 at 436.182 kb on + strand, within LU632_RS02205 at 436.182 kb on + strand, within LU632_RS02205 at 436.182 kb on + strand, within LU632_RS02205 at 436.183 kb on - strand, within LU632_RS02205 at 436.183 kb on - strand, within LU632_RS02205 at 436.194 kb on + strand, within LU632_RS02205 at 436.194 kb on + strand, within LU632_RS02205 at 436.194 kb on + strand, within LU632_RS02205 at 436.195 kb on - strand, within LU632_RS02205 at 436.195 kb on - strand, within LU632_RS02205 at 436.197 kb on - strand, within LU632_RS02205 at 436.210 kb on - strand, within LU632_RS02205 at 436.211 kb on + strand, within LU632_RS02205 at 436.211 kb on + strand, within LU632_RS02205 at 436.327 kb on + strand, within LU632_RS02205 at 436.327 kb on + strand, within LU632_RS02205 at 436.328 kb on - strand, within LU632_RS02205 at 436.328 kb on - strand, within LU632_RS02205 at 436.328 kb on - strand, within LU632_RS02205 at 436.328 kb on - strand, within LU632_RS02205 at 436.390 kb on - strand, within LU632_RS02205 at 436.391 kb on + strand, within LU632_RS02205 at 436.464 kb on + strand, within LU632_RS02205 at 436.465 kb on - strand, within LU632_RS02205 at 436.465 kb on - strand, within LU632_RS02205 at 436.504 kb on + strand, within LU632_RS02205 at 436.504 kb on + strand, within LU632_RS02205 at 436.504 kb on + strand, within LU632_RS02205 at 436.517 kb on + strand, within LU632_RS02205 at 436.602 kb on + strand, within LU632_RS02205 at 436.620 kb on - strand, within LU632_RS02205 at 436.983 kb on + strand, within LU632_RS02205 at 436.984 kb on - strand, within LU632_RS02205 at 437.031 kb on + strand at 437.031 kb on + strand at 437.088 kb on + strand at 437.108 kb on + strand at 437.186 kb on - strand at 437.296 kb on - strand at 437.299 kb on - strand at 437.308 kb on - strand at 437.392 kb on + strand, within yraP at 437.392 kb on + strand, within yraP at 437.485 kb on - strand, within yraP at 437.485 kb on - strand, within yraP at 437.537 kb on + strand, within yraP at 437.538 kb on - strand, within yraP at 437.683 kb on - strand, within yraP at 437.683 kb on - strand, within yraP at 437.683 kb on - strand, within yraP at 437.816 kb on - strand at 437.830 kb on + strand at 437.858 kb on + strand at 437.859 kb on - strand at 437.932 kb on + strand, within diaA at 437.932 kb on + strand, within diaA at 437.932 kb on + strand, within diaA at 437.933 kb on - strand, within diaA at 437.996 kb on + strand, within diaA at 437.996 kb on + strand, within diaA at 437.997 kb on - strand, within diaA at 437.997 kb on - strand, within diaA at 438.049 kb on + strand, within diaA at 438.083 kb on + strand, within diaA at 438.084 kb on - strand, within diaA at 438.098 kb on - strand, within diaA at 438.112 kb on + strand, within diaA
Per-strain Table
Position Strand Gene LocusTag Fraction Experiment:TE2, Cucumber 6 Petiole 1 (TE2-S-C6-P1) remove 434,327 + LU632_RS02200 0.29 -0.2 434,328 - LU632_RS02200 0.29 -0.9 434,372 + LU632_RS02200 0.33 +0.0 434,373 - LU632_RS02200 0.33 +0.2 434,598 - LU632_RS02200 0.53 +0.9 434,741 - LU632_RS02200 0.65 -2.8 434,761 + LU632_RS02200 0.67 +1.2 434,858 - LU632_RS02200 0.75 -0.7 434,876 + LU632_RS02200 0.77 -1.7 434,876 + LU632_RS02200 0.77 -0.3 434,897 - LU632_RS02200 0.79 -1.2 434,975 - LU632_RS02200 0.86 +1.3 435,004 + LU632_RS02200 0.88 -0.9 435,014 + LU632_RS02200 0.89 -0.7 435,015 - LU632_RS02200 0.89 +0.9 435,096 - +1.7 435,229 - +0.9 435,570 + LU632_RS02205 0.15 +0.7 435,571 - LU632_RS02205 0.15 -3.1 435,571 - LU632_RS02205 0.15 -1.3 435,928 - LU632_RS02205 0.33 +0.6 436,109 + LU632_RS02205 0.43 -0.7 436,182 + LU632_RS02205 0.47 +0.7 436,182 + LU632_RS02205 0.47 -0.9 436,182 + LU632_RS02205 0.47 -1.5 436,182 + LU632_RS02205 0.47 +0.7 436,183 - LU632_RS02205 0.47 +1.0 436,183 - LU632_RS02205 0.47 +0.7 436,194 + LU632_RS02205 0.47 -1.7 436,194 + LU632_RS02205 0.47 +0.5 436,194 + LU632_RS02205 0.47 +0.2 436,195 - LU632_RS02205 0.47 +0.7 436,195 - LU632_RS02205 0.47 -0.6 436,197 - LU632_RS02205 0.48 +0.0 436,210 - LU632_RS02205 0.48 -3.1 436,211 + LU632_RS02205 0.48 +0.1 436,211 + LU632_RS02205 0.48 +1.7 436,327 + LU632_RS02205 0.54 -1.9 436,327 + LU632_RS02205 0.54 +2.0 436,328 - LU632_RS02205 0.54 -1.1 436,328 - LU632_RS02205 0.54 +0.9 436,328 - LU632_RS02205 0.54 +0.4 436,328 - LU632_RS02205 0.54 +1.4 436,390 - LU632_RS02205 0.58 +0.3 436,391 + LU632_RS02205 0.58 -0.7 436,464 + LU632_RS02205 0.62 -0.1 436,465 - LU632_RS02205 0.62 +1.9 436,465 - LU632_RS02205 0.62 +0.8 436,504 + LU632_RS02205 0.64 -1.0 436,504 + LU632_RS02205 0.64 -1.3 436,504 + LU632_RS02205 0.64 -0.3 436,517 + LU632_RS02205 0.64 -1.0 436,602 + LU632_RS02205 0.69 -1.7 436,620 - LU632_RS02205 0.70 -0.4 436,983 + LU632_RS02205 0.89 -0.3 436,984 - LU632_RS02205 0.89 +0.5 437,031 + -2.7 437,031 + -2.4 437,088 + +2.7 437,108 + -0.2 437,186 - -2.1 437,296 - -2.5 437,299 - +0.0 437,308 - -2.6 437,392 + yraP LU632_RS02210 0.19 -1.1 437,392 + yraP LU632_RS02210 0.19 -2.9 437,485 - yraP LU632_RS02210 0.35 -0.3 437,485 - yraP LU632_RS02210 0.35 -1.5 437,537 + yraP LU632_RS02210 0.44 +0.7 437,538 - yraP LU632_RS02210 0.44 -1.3 437,683 - yraP LU632_RS02210 0.70 -3.0 437,683 - yraP LU632_RS02210 0.70 -0.8 437,683 - yraP LU632_RS02210 0.70 -3.2 437,816 - -0.3 437,830 + +1.0 437,858 + +0.7 437,859 - -2.1 437,932 + diaA LU632_RS02215 0.11 -0.3 437,932 + diaA LU632_RS02215 0.11 -3.6 437,932 + diaA LU632_RS02215 0.11 -0.6 437,933 - diaA LU632_RS02215 0.11 -0.3 437,996 + diaA LU632_RS02215 0.22 -0.7 437,996 + diaA LU632_RS02215 0.22 -1.9 437,997 - diaA LU632_RS02215 0.22 -0.2 437,997 - diaA LU632_RS02215 0.22 +1.2 438,049 + diaA LU632_RS02215 0.31 +0.7 438,083 + diaA LU632_RS02215 0.37 -0.9 438,084 - diaA LU632_RS02215 0.37 +1.0 438,098 - diaA LU632_RS02215 0.39 -0.9 438,112 + diaA LU632_RS02215 0.41 -0.5
Or see this region's nucleotide sequence