Experiment: Experiment:TE2, Cucumber 6 Petiole 1 (TE2-S-C6-P1)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LU632_RS01260 and LU632_RS01265 are separated by 174 nucleotides LU632_RS01265 and ulaR are separated by 75 nucleotides ulaR and ulaG are separated by 105 nucleotides
LU632_RS01260: LU632_RS01260 - MurR/RpiR family transcriptional regulator, at 263,052 to 263,912
_RS01260
LU632_RS01265: LU632_RS01265 - hypothetical protein, at 264,087 to 264,224
_RS01265
LU632_RS01270: ulaR - HTH-type transcriptional regulator UlaR, at 264,300 to 265,055
ulaR
LU632_RS01275: ulaG - L-ascorbate 6-phosphate lactonase, at 265,161 to 266,225
ulaG
Position (kb) 264
265
266 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 263.347 kb on + strand, within LU632_RS01260 at 263.511 kb on + strand, within LU632_RS01260 at 263.511 kb on + strand, within LU632_RS01260 at 263.512 kb on - strand, within LU632_RS01260 at 263.512 kb on - strand, within LU632_RS01260 at 263.513 kb on + strand, within LU632_RS01260 at 263.513 kb on + strand, within LU632_RS01260 at 263.514 kb on - strand, within LU632_RS01260 at 263.601 kb on - strand, within LU632_RS01260 at 263.621 kb on + strand, within LU632_RS01260 at 263.672 kb on + strand, within LU632_RS01260 at 263.673 kb on - strand, within LU632_RS01260 at 263.673 kb on - strand, within LU632_RS01260 at 263.673 kb on - strand, within LU632_RS01260 at 263.677 kb on - strand, within LU632_RS01260 at 263.682 kb on + strand, within LU632_RS01260 at 263.715 kb on - strand, within LU632_RS01260 at 263.735 kb on - strand, within LU632_RS01260 at 263.825 kb on + strand, within LU632_RS01260 at 263.967 kb on + strand at 263.975 kb on + strand at 263.976 kb on - strand at 263.977 kb on + strand at 264.037 kb on - strand at 264.056 kb on - strand at 264.060 kb on - strand at 264.060 kb on - strand at 264.100 kb on - strand at 264.127 kb on - strand, within LU632_RS01265 at 264.147 kb on + strand, within LU632_RS01265 at 264.147 kb on + strand, within LU632_RS01265 at 264.253 kb on + strand at 264.255 kb on + strand at 264.268 kb on - strand at 264.268 kb on - strand at 264.354 kb on - strand at 264.354 kb on - strand at 264.467 kb on - strand, within ulaR at 264.467 kb on - strand, within ulaR at 264.467 kb on - strand, within ulaR at 264.467 kb on - strand, within ulaR at 264.504 kb on - strand, within ulaR at 264.515 kb on - strand, within ulaR at 264.517 kb on - strand, within ulaR at 264.550 kb on + strand, within ulaR at 264.568 kb on + strand, within ulaR at 264.670 kb on + strand, within ulaR at 264.688 kb on + strand, within ulaR at 264.689 kb on - strand, within ulaR at 264.693 kb on - strand, within ulaR at 264.846 kb on - strand, within ulaR at 264.878 kb on + strand, within ulaR at 264.879 kb on - strand, within ulaR at 264.905 kb on + strand, within ulaR at 264.965 kb on + strand, within ulaR at 264.999 kb on - strand at 264.999 kb on - strand at 264.999 kb on - strand at 265.034 kb on + strand at 265.141 kb on + strand at 265.156 kb on + strand at 265.156 kb on + strand at 265.376 kb on + strand, within ulaG at 265.377 kb on - strand, within ulaG at 265.394 kb on + strand, within ulaG at 265.395 kb on - strand, within ulaG at 265.407 kb on - strand, within ulaG at 265.407 kb on - strand, within ulaG at 265.428 kb on + strand, within ulaG at 265.429 kb on - strand, within ulaG at 265.433 kb on + strand, within ulaG at 265.506 kb on - strand, within ulaG at 265.506 kb on - strand, within ulaG at 265.528 kb on + strand, within ulaG at 265.528 kb on + strand, within ulaG at 265.528 kb on + strand, within ulaG at 265.529 kb on - strand, within ulaG at 265.529 kb on - strand, within ulaG at 265.529 kb on - strand, within ulaG at 265.533 kb on - strand, within ulaG at 265.533 kb on - strand, within ulaG at 265.540 kb on + strand, within ulaG at 265.592 kb on - strand, within ulaG at 265.616 kb on + strand, within ulaG at 265.712 kb on + strand, within ulaG at 265.738 kb on - strand, within ulaG at 265.770 kb on + strand, within ulaG
Per-strain Table
Position Strand Gene LocusTag Fraction Experiment:TE2, Cucumber 6 Petiole 1 (TE2-S-C6-P1) remove 263,347 + LU632_RS01260 0.34 -2.7 263,511 + LU632_RS01260 0.53 -4.0 263,511 + LU632_RS01260 0.53 -2.0 263,512 - LU632_RS01260 0.53 +0.4 263,512 - LU632_RS01260 0.53 -1.7 263,513 + LU632_RS01260 0.54 -3.5 263,513 + LU632_RS01260 0.54 -1.6 263,514 - LU632_RS01260 0.54 +0.5 263,601 - LU632_RS01260 0.64 +0.3 263,621 + LU632_RS01260 0.66 -0.7 263,672 + LU632_RS01260 0.72 +0.5 263,673 - LU632_RS01260 0.72 +0.6 263,673 - LU632_RS01260 0.72 -1.5 263,673 - LU632_RS01260 0.72 +0.9 263,677 - LU632_RS01260 0.73 +1.0 263,682 + LU632_RS01260 0.73 +0.2 263,715 - LU632_RS01260 0.77 +1.3 263,735 - LU632_RS01260 0.79 -1.3 263,825 + LU632_RS01260 0.90 +0.2 263,967 + +0.6 263,975 + +0.8 263,976 - -1.2 263,977 + -0.5 264,037 - -0.2 264,056 - +0.1 264,060 - +0.2 264,060 - -1.4 264,100 - -1.8 264,127 - LU632_RS01265 0.29 +0.6 264,147 + LU632_RS01265 0.43 -0.9 264,147 + LU632_RS01265 0.43 +0.4 264,253 + -1.4 264,255 + -2.7 264,268 - -1.6 264,268 - -0.5 264,354 - -0.6 264,354 - -1.1 264,467 - ulaR LU632_RS01270 0.22 -2.2 264,467 - ulaR LU632_RS01270 0.22 -1.4 264,467 - ulaR LU632_RS01270 0.22 -0.9 264,467 - ulaR LU632_RS01270 0.22 -2.2 264,504 - ulaR LU632_RS01270 0.27 +1.3 264,515 - ulaR LU632_RS01270 0.28 -0.9 264,517 - ulaR LU632_RS01270 0.29 +0.6 264,550 + ulaR LU632_RS01270 0.33 -1.9 264,568 + ulaR LU632_RS01270 0.35 -0.4 264,670 + ulaR LU632_RS01270 0.49 -0.9 264,688 + ulaR LU632_RS01270 0.51 +0.3 264,689 - ulaR LU632_RS01270 0.51 +1.6 264,693 - ulaR LU632_RS01270 0.52 -3.4 264,846 - ulaR LU632_RS01270 0.72 -2.9 264,878 + ulaR LU632_RS01270 0.76 +0.6 264,879 - ulaR LU632_RS01270 0.77 -0.6 264,905 + ulaR LU632_RS01270 0.80 -2.2 264,965 + ulaR LU632_RS01270 0.88 -0.4 264,999 - +0.1 264,999 - -0.9 264,999 - -0.4 265,034 + -3.4 265,141 + -0.4 265,156 + -1.3 265,156 + +0.6 265,376 + ulaG LU632_RS01275 0.20 +1.9 265,377 - ulaG LU632_RS01275 0.20 -0.6 265,394 + ulaG LU632_RS01275 0.22 +0.1 265,395 - ulaG LU632_RS01275 0.22 -2.6 265,407 - ulaG LU632_RS01275 0.23 -0.4 265,407 - ulaG LU632_RS01275 0.23 -0.1 265,428 + ulaG LU632_RS01275 0.25 +2.0 265,429 - ulaG LU632_RS01275 0.25 +0.5 265,433 + ulaG LU632_RS01275 0.26 +1.0 265,506 - ulaG LU632_RS01275 0.32 -2.5 265,506 - ulaG LU632_RS01275 0.32 -2.4 265,528 + ulaG LU632_RS01275 0.34 +0.5 265,528 + ulaG LU632_RS01275 0.34 -0.1 265,528 + ulaG LU632_RS01275 0.34 -0.6 265,529 - ulaG LU632_RS01275 0.35 +0.2 265,529 - ulaG LU632_RS01275 0.35 +1.6 265,529 - ulaG LU632_RS01275 0.35 +0.6 265,533 - ulaG LU632_RS01275 0.35 -0.3 265,533 - ulaG LU632_RS01275 0.35 -0.3 265,540 + ulaG LU632_RS01275 0.36 +1.0 265,592 - ulaG LU632_RS01275 0.40 -0.3 265,616 + ulaG LU632_RS01275 0.43 -0.4 265,712 + ulaG LU632_RS01275 0.52 +1.4 265,738 - ulaG LU632_RS01275 0.54 -3.5 265,770 + ulaG LU632_RS01275 0.57 +0.7
Or see this region's nucleotide sequence