Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS00835

Experiment: Experiment:TE2, Cucumber 6 Petiole 1 (TE2-S-C6-P1)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntLU632_RS00830 and LU632_RS00835 are separated by 193 nucleotidesLU632_RS00835 and zinT are separated by 76 nucleotideszinT and LU632_RS00845 are separated by 181 nucleotides LU632_RS00830: LU632_RS00830 - SIS domain-containing protein, at 180,669 to 181,694 _RS00830 LU632_RS00835: LU632_RS00835 - DeoR/GlpR family DNA-binding transcription regulator, at 181,888 to 182,664 _RS00835 LU632_RS00840: zinT - metal-binding protein ZinT, at 182,741 to 183,388 zinT LU632_RS00845: LU632_RS00845 - ABC transporter ATP-binding protein/permease, at 183,570 to 185,403 _RS00845 Position (kb) 181 182 183Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 181.069 kb on - strand, within LU632_RS00830at 181.137 kb on + strand, within LU632_RS00830at 181.140 kb on - strand, within LU632_RS00830at 181.143 kb on - strand, within LU632_RS00830at 181.183 kb on + strand, within LU632_RS00830at 181.184 kb on - strand, within LU632_RS00830at 181.184 kb on - strand, within LU632_RS00830at 181.184 kb on - strand, within LU632_RS00830at 181.184 kb on - strand, within LU632_RS00830at 181.185 kb on + strand, within LU632_RS00830at 181.186 kb on - strand, within LU632_RS00830at 181.225 kb on + strand, within LU632_RS00830at 181.226 kb on - strand, within LU632_RS00830at 181.226 kb on - strand, within LU632_RS00830at 181.241 kb on + strand, within LU632_RS00830at 181.334 kb on + strand, within LU632_RS00830at 181.370 kb on + strand, within LU632_RS00830at 181.370 kb on + strand, within LU632_RS00830at 181.495 kb on - strand, within LU632_RS00830at 181.495 kb on - strand, within LU632_RS00830at 181.563 kb on + strand, within LU632_RS00830at 181.564 kb on - strand, within LU632_RS00830at 181.564 kb on - strand, within LU632_RS00830at 181.617 kb on - strandat 181.617 kb on - strandat 181.618 kb on + strandat 181.618 kb on + strandat 181.619 kb on - strandat 181.619 kb on - strandat 181.619 kb on - strandat 181.619 kb on - strandat 181.824 kb on + strandat 181.844 kb on + strandat 181.955 kb on + strandat 181.956 kb on - strandat 182.012 kb on + strand, within LU632_RS00835at 182.054 kb on + strand, within LU632_RS00835at 182.055 kb on - strand, within LU632_RS00835at 182.081 kb on - strand, within LU632_RS00835at 182.095 kb on + strand, within LU632_RS00835at 182.095 kb on + strand, within LU632_RS00835at 182.095 kb on + strand, within LU632_RS00835at 182.096 kb on - strand, within LU632_RS00835at 182.096 kb on - strand, within LU632_RS00835at 182.116 kb on - strand, within LU632_RS00835at 182.250 kb on - strand, within LU632_RS00835at 182.322 kb on + strand, within LU632_RS00835at 182.322 kb on + strand, within LU632_RS00835at 182.322 kb on + strand, within LU632_RS00835at 182.323 kb on - strand, within LU632_RS00835at 182.323 kb on - strand, within LU632_RS00835at 182.323 kb on - strand, within LU632_RS00835at 182.323 kb on - strand, within LU632_RS00835at 182.339 kb on - strand, within LU632_RS00835at 182.339 kb on - strand, within LU632_RS00835at 182.339 kb on - strand, within LU632_RS00835at 182.367 kb on + strand, within LU632_RS00835at 182.417 kb on + strand, within LU632_RS00835at 182.448 kb on + strand, within LU632_RS00835at 182.493 kb on + strand, within LU632_RS00835at 182.565 kb on + strand, within LU632_RS00835at 182.577 kb on + strand, within LU632_RS00835at 182.577 kb on + strand, within LU632_RS00835at 182.617 kb on + strandat 182.692 kb on + strandat 182.692 kb on + strandat 182.910 kb on + strand, within zinTat 182.911 kb on - strand, within zinTat 182.979 kb on + strand, within zinTat 182.979 kb on - strand, within zinTat 182.980 kb on - strand, within zinTat 183.003 kb on + strand, within zinTat 183.004 kb on - strand, within zinTat 183.004 kb on - strand, within zinTat 183.010 kb on - strand, within zinTat 183.068 kb on - strand, within zinTat 183.074 kb on - strand, within zinTat 183.102 kb on + strand, within zinTat 183.102 kb on + strand, within zinTat 183.106 kb on - strand, within zinTat 183.182 kb on + strand, within zinTat 183.183 kb on - strand, within zinTat 183.187 kb on - strand, within zinTat 183.193 kb on + strand, within zinTat 183.449 kb on + strandat 183.451 kb on + strandat 183.452 kb on - strandat 183.504 kb on + strandat 183.637 kb on - strandat 183.656 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Experiment:TE2, Cucumber 6 Petiole 1 (TE2-S-C6-P1)
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181,069 - LU632_RS00830 0.39 -1.2
181,137 + LU632_RS00830 0.46 -1.0
181,140 - LU632_RS00830 0.46 +0.9
181,143 - LU632_RS00830 0.46 +4.5
181,183 + LU632_RS00830 0.50 -2.9
181,184 - LU632_RS00830 0.50 -0.4
181,184 - LU632_RS00830 0.50 -0.3
181,184 - LU632_RS00830 0.50 -0.7
181,184 - LU632_RS00830 0.50 +0.8
181,185 + LU632_RS00830 0.50 -1.8
181,186 - LU632_RS00830 0.50 +2.2
181,225 + LU632_RS00830 0.54 -1.8
181,226 - LU632_RS00830 0.54 +0.8
181,226 - LU632_RS00830 0.54 -3.1
181,241 + LU632_RS00830 0.56 +0.2
181,334 + LU632_RS00830 0.65 +0.6
181,370 + LU632_RS00830 0.68 -3.3
181,370 + LU632_RS00830 0.68 +1.3
181,495 - LU632_RS00830 0.81 -0.4
181,495 - LU632_RS00830 0.81 +1.1
181,563 + LU632_RS00830 0.87 +0.4
181,564 - LU632_RS00830 0.87 +0.4
181,564 - LU632_RS00830 0.87 -2.6
181,617 - +1.8
181,617 - +0.8
181,618 + -0.8
181,618 + -0.4
181,619 - -1.4
181,619 - +0.6
181,619 - +3.3
181,619 - +2.9
181,824 + +0.6
181,844 + -0.2
181,955 + -2.0
181,956 - -0.4
182,012 + LU632_RS00835 0.16 -0.1
182,054 + LU632_RS00835 0.21 +4.2
182,055 - LU632_RS00835 0.21 -1.3
182,081 - LU632_RS00835 0.25 +0.6
182,095 + LU632_RS00835 0.27 +3.8
182,095 + LU632_RS00835 0.27 +3.2
182,095 + LU632_RS00835 0.27 -3.3
182,096 - LU632_RS00835 0.27 +2.3
182,096 - LU632_RS00835 0.27 -1.4
182,116 - LU632_RS00835 0.29 -2.4
182,250 - LU632_RS00835 0.47 +0.3
182,322 + LU632_RS00835 0.56 +1.4
182,322 + LU632_RS00835 0.56 -1.5
182,322 + LU632_RS00835 0.56 +0.1
182,323 - LU632_RS00835 0.56 +3.4
182,323 - LU632_RS00835 0.56 +1.2
182,323 - LU632_RS00835 0.56 +2.1
182,323 - LU632_RS00835 0.56 -2.6
182,339 - LU632_RS00835 0.58 -0.9
182,339 - LU632_RS00835 0.58 +0.2
182,339 - LU632_RS00835 0.58 +0.3
182,367 + LU632_RS00835 0.62 +3.0
182,417 + LU632_RS00835 0.68 -2.0
182,448 + LU632_RS00835 0.72 -0.8
182,493 + LU632_RS00835 0.78 +1.6
182,565 + LU632_RS00835 0.87 -1.9
182,577 + LU632_RS00835 0.89 -1.8
182,577 + LU632_RS00835 0.89 +1.3
182,617 + -0.8
182,692 + +1.8
182,692 + -0.3
182,910 + zinT LU632_RS00840 0.26 +0.4
182,911 - zinT LU632_RS00840 0.26 -0.0
182,979 + zinT LU632_RS00840 0.37 -0.6
182,979 - zinT LU632_RS00840 0.37 -1.9
182,980 - zinT LU632_RS00840 0.37 +0.6
183,003 + zinT LU632_RS00840 0.40 -0.4
183,004 - zinT LU632_RS00840 0.41 -3.5
183,004 - zinT LU632_RS00840 0.41 +0.4
183,010 - zinT LU632_RS00840 0.42 -1.4
183,068 - zinT LU632_RS00840 0.50 +0.4
183,074 - zinT LU632_RS00840 0.51 +0.1
183,102 + zinT LU632_RS00840 0.56 -0.4
183,102 + zinT LU632_RS00840 0.56 -2.2
183,106 - zinT LU632_RS00840 0.56 +0.7
183,182 + zinT LU632_RS00840 0.68 -3.3
183,183 - zinT LU632_RS00840 0.68 +0.1
183,187 - zinT LU632_RS00840 0.69 +1.1
183,193 + zinT LU632_RS00840 0.70 -0.4
183,449 + +0.8
183,451 + +0.9
183,452 - +0.3
183,504 + -1.2
183,637 - +0.8
183,656 - -0.1

Or see this region's nucleotide sequence