Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS00630

Experiment: Experiment:TE2, Cucumber 6 Petiole 1 (TE2-S-C6-P1)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntLU632_RS00625 and adhP are separated by 323 nucleotidesadhP and LU632_RS00635 are separated by 421 nucleotides LU632_RS00625: LU632_RS00625 - MFS transporter, at 127,716 to 129,320 _RS00625 LU632_RS00630: adhP - alcohol dehydrogenase AdhP, at 129,644 to 130,657 adhP LU632_RS00635: LU632_RS00635 - hypothetical protein, at 131,079 to 131,258 _RS00635 Position (kb) 129 130 131Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3 4at 128.752 kb on - strand, within LU632_RS00625at 128.752 kb on - strand, within LU632_RS00625at 128.754 kb on - strand, within LU632_RS00625at 128.754 kb on - strand, within LU632_RS00625at 128.809 kb on + strand, within LU632_RS00625at 128.925 kb on + strand, within LU632_RS00625at 128.926 kb on - strand, within LU632_RS00625at 128.977 kb on + strand, within LU632_RS00625at 128.977 kb on + strand, within LU632_RS00625at 128.978 kb on - strand, within LU632_RS00625at 128.989 kb on + strand, within LU632_RS00625at 128.990 kb on - strand, within LU632_RS00625at 128.992 kb on + strand, within LU632_RS00625at 128.993 kb on - strand, within LU632_RS00625at 128.993 kb on - strand, within LU632_RS00625at 128.993 kb on - strand, within LU632_RS00625at 128.998 kb on + strand, within LU632_RS00625at 128.998 kb on + strand, within LU632_RS00625at 128.998 kb on + strand, within LU632_RS00625at 128.998 kb on + strand, within LU632_RS00625at 128.998 kb on + strand, within LU632_RS00625at 128.999 kb on - strand, within LU632_RS00625at 128.999 kb on - strand, within LU632_RS00625at 128.999 kb on - strand, within LU632_RS00625at 128.999 kb on - strand, within LU632_RS00625at 129.006 kb on - strand, within LU632_RS00625at 129.008 kb on + strand, within LU632_RS00625at 129.028 kb on + strand, within LU632_RS00625at 129.032 kb on + strand, within LU632_RS00625at 129.033 kb on - strand, within LU632_RS00625at 129.033 kb on - strand, within LU632_RS00625at 129.036 kb on + strand, within LU632_RS00625at 129.036 kb on + strand, within LU632_RS00625at 129.121 kb on + strand, within LU632_RS00625at 129.214 kb on + strandat 129.290 kb on - strandat 129.309 kb on - strandat 129.320 kb on + strandat 129.336 kb on + strandat 129.345 kb on + strandat 129.346 kb on - strandat 129.360 kb on - strandat 129.383 kb on - strandat 129.383 kb on - strandat 129.604 kb on + strandat 129.604 kb on + strandat 129.605 kb on - strandat 129.605 kb on - strandat 129.617 kb on + strandat 129.617 kb on + strandat 129.617 kb on + strandat 129.618 kb on - strandat 129.618 kb on - strandat 129.618 kb on - strandat 129.619 kb on + strandat 129.619 kb on + strandat 129.619 kb on + strandat 129.619 kb on + strandat 129.620 kb on - strandat 129.621 kb on + strandat 129.621 kb on + strandat 129.621 kb on + strandat 129.621 kb on + strandat 129.621 kb on + strandat 129.806 kb on - strand, within adhPat 129.807 kb on + strand, within adhPat 129.948 kb on + strand, within adhPat 130.006 kb on + strand, within adhPat 130.007 kb on - strand, within adhPat 130.095 kb on - strand, within adhPat 130.146 kb on - strand, within adhPat 130.146 kb on - strand, within adhPat 130.165 kb on + strand, within adhPat 130.181 kb on + strand, within adhPat 130.225 kb on + strand, within adhPat 130.226 kb on - strand, within adhPat 130.226 kb on - strand, within adhPat 130.275 kb on + strand, within adhPat 130.370 kb on - strand, within adhPat 130.585 kb on + strandat 130.586 kb on - strandat 130.588 kb on + strandat 130.656 kb on - strandat 130.730 kb on - strandat 130.855 kb on + strandat 130.867 kb on - strandat 130.943 kb on + strandat 131.001 kb on - strandat 131.022 kb on + strandat 131.137 kb on - strand, within LU632_RS00635at 131.156 kb on + strand, within LU632_RS00635at 131.204 kb on + strand, within LU632_RS00635at 131.303 kb on + strandat 131.304 kb on - strandat 131.308 kb on + strandat 131.309 kb on - strandat 131.309 kb on - strandat 131.331 kb on - strandat 131.365 kb on + strandat 131.365 kb on + strandat 131.366 kb on - strandat 131.366 kb on - strandat 131.369 kb on - strandat 131.396 kb on + strandat 131.427 kb on - strandat 131.437 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Experiment:TE2, Cucumber 6 Petiole 1 (TE2-S-C6-P1)
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128,752 - LU632_RS00625 0.65 -2.8
128,752 - LU632_RS00625 0.65 -1.3
128,754 - LU632_RS00625 0.65 -0.3
128,754 - LU632_RS00625 0.65 +0.7
128,809 + LU632_RS00625 0.68 -2.9
128,925 + LU632_RS00625 0.75 +3.0
128,926 - LU632_RS00625 0.75 -1.0
128,977 + LU632_RS00625 0.79 +1.8
128,977 + LU632_RS00625 0.79 -2.2
128,978 - LU632_RS00625 0.79 -1.0
128,989 + LU632_RS00625 0.79 +1.0
128,990 - LU632_RS00625 0.79 +0.6
128,992 + LU632_RS00625 0.80 +1.1
128,993 - LU632_RS00625 0.80 -1.0
128,993 - LU632_RS00625 0.80 +1.1
128,993 - LU632_RS00625 0.80 +1.3
128,998 + LU632_RS00625 0.80 +1.4
128,998 + LU632_RS00625 0.80 -0.4
128,998 + LU632_RS00625 0.80 -1.1
128,998 + LU632_RS00625 0.80 -0.6
128,998 + LU632_RS00625 0.80 +0.7
128,999 - LU632_RS00625 0.80 -1.3
128,999 - LU632_RS00625 0.80 +3.2
128,999 - LU632_RS00625 0.80 +0.3
128,999 - LU632_RS00625 0.80 +0.6
129,006 - LU632_RS00625 0.80 +1.7
129,008 + LU632_RS00625 0.80 +2.9
129,028 + LU632_RS00625 0.82 +0.3
129,032 + LU632_RS00625 0.82 -0.4
129,033 - LU632_RS00625 0.82 +1.3
129,033 - LU632_RS00625 0.82 +0.6
129,036 + LU632_RS00625 0.82 -0.2
129,036 + LU632_RS00625 0.82 +0.6
129,121 + LU632_RS00625 0.88 -0.0
129,214 + -2.1
129,290 - +2.6
129,309 - -0.4
129,320 + +0.8
129,336 + +1.1
129,345 + -1.2
129,346 - -1.4
129,360 - -1.8
129,383 - -0.4
129,383 - +0.6
129,604 + -0.8
129,604 + -0.6
129,605 - +0.6
129,605 - -1.2
129,617 + +2.2
129,617 + -0.3
129,617 + +0.8
129,618 - +0.9
129,618 - +0.0
129,618 - +1.7
129,619 + +0.2
129,619 + -0.4
129,619 + -0.8
129,619 + -1.4
129,620 - -0.0
129,621 + -3.2
129,621 + +0.8
129,621 + +0.6
129,621 + -0.2
129,621 + -1.0
129,806 - adhP LU632_RS00630 0.16 -0.4
129,807 + adhP LU632_RS00630 0.16 +0.4
129,948 + adhP LU632_RS00630 0.30 +2.2
130,006 + adhP LU632_RS00630 0.36 -1.8
130,007 - adhP LU632_RS00630 0.36 +0.2
130,095 - adhP LU632_RS00630 0.44 +1.1
130,146 - adhP LU632_RS00630 0.50 -2.4
130,146 - adhP LU632_RS00630 0.50 -2.8
130,165 + adhP LU632_RS00630 0.51 +0.3
130,181 + adhP LU632_RS00630 0.53 +0.3
130,225 + adhP LU632_RS00630 0.57 +0.4
130,226 - adhP LU632_RS00630 0.57 -1.8
130,226 - adhP LU632_RS00630 0.57 -0.1
130,275 + adhP LU632_RS00630 0.62 -4.4
130,370 - adhP LU632_RS00630 0.72 -1.2
130,585 + -3.0
130,586 - -2.8
130,588 + +0.3
130,656 - -1.0
130,730 - -1.0
130,855 + +1.2
130,867 - +0.5
130,943 + -1.3
131,001 - +3.9
131,022 + -0.3
131,137 - LU632_RS00635 0.32 +0.1
131,156 + LU632_RS00635 0.43 +0.3
131,204 + LU632_RS00635 0.69 -2.2
131,303 + +1.0
131,304 - -1.2
131,308 + +0.3
131,309 - -1.4
131,309 - -0.8
131,331 - -0.2
131,365 + -1.4
131,365 + -0.4
131,366 - +1.7
131,366 - -2.6
131,369 - -0.6
131,396 + -0.3
131,427 - -1.1
131,437 - +2.1

Or see this region's nucleotide sequence