Experiment: Experiment:TE2, Cucumber 6 Petiole 1 (TE2-S-C6-P1)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt glyQ and LU632_RS00195 are separated by 197 nucleotides LU632_RS00195 and LU632_RS00200 overlap by 13 nucleotides LU632_RS00200 and LU632_RS00205 are separated by 31 nucleotides
LU632_RS00190: glyQ - glycine--tRNA ligase subunit alpha, at 36,959 to 37,870
glyQ
LU632_RS00195: LU632_RS00195 - acyltransferase, at 38,068 to 39,064
_RS00195
LU632_RS00200: LU632_RS00200 - helix-turn-helix domain-containing protein, at 39,052 to 39,434
_RS00200
LU632_RS00205: LU632_RS00205 - isochorismatase family protein, at 39,466 to 40,002
_RS00205
Position (kb) 38
39
40 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 37.953 kb on + strand at 37.954 kb on - strand at 37.954 kb on - strand at 38.003 kb on + strand at 38.004 kb on - strand at 38.039 kb on - strand at 38.091 kb on - strand at 38.094 kb on + strand at 38.095 kb on - strand at 38.127 kb on + strand at 38.127 kb on + strand at 38.128 kb on - strand at 38.128 kb on - strand at 38.149 kb on + strand at 38.149 kb on + strand at 38.150 kb on - strand at 38.255 kb on - strand, within LU632_RS00195 at 38.280 kb on + strand, within LU632_RS00195 at 38.324 kb on - strand, within LU632_RS00195 at 38.324 kb on - strand, within LU632_RS00195 at 38.324 kb on - strand, within LU632_RS00195 at 38.344 kb on + strand, within LU632_RS00195 at 38.345 kb on - strand, within LU632_RS00195 at 38.346 kb on + strand, within LU632_RS00195 at 38.390 kb on + strand, within LU632_RS00195 at 38.390 kb on + strand, within LU632_RS00195 at 38.391 kb on - strand, within LU632_RS00195 at 38.415 kb on - strand, within LU632_RS00195 at 38.415 kb on - strand, within LU632_RS00195 at 38.450 kb on + strand, within LU632_RS00195 at 38.608 kb on + strand, within LU632_RS00195 at 38.609 kb on - strand, within LU632_RS00195 at 38.612 kb on + strand, within LU632_RS00195 at 38.613 kb on - strand, within LU632_RS00195 at 38.616 kb on - strand, within LU632_RS00195 at 38.777 kb on + strand, within LU632_RS00195 at 38.777 kb on + strand, within LU632_RS00195 at 38.784 kb on - strand, within LU632_RS00195 at 38.784 kb on - strand, within LU632_RS00195 at 38.886 kb on - strand, within LU632_RS00195 at 38.975 kb on - strand at 39.053 kb on + strand at 39.054 kb on - strand at 39.054 kb on - strand at 39.085 kb on - strand at 39.085 kb on - strand at 39.203 kb on + strand, within LU632_RS00200 at 39.204 kb on - strand, within LU632_RS00200 at 39.204 kb on - strand, within LU632_RS00200 at 39.307 kb on - strand, within LU632_RS00200 at 39.567 kb on + strand, within LU632_RS00205 at 39.567 kb on + strand, within LU632_RS00205 at 39.568 kb on - strand, within LU632_RS00205 at 39.594 kb on + strand, within LU632_RS00205 at 39.747 kb on + strand, within LU632_RS00205 at 39.748 kb on - strand, within LU632_RS00205 at 39.748 kb on - strand, within LU632_RS00205 at 39.749 kb on + strand, within LU632_RS00205 at 39.750 kb on - strand, within LU632_RS00205 at 39.750 kb on - strand, within LU632_RS00205 at 39.750 kb on - strand, within LU632_RS00205 at 39.750 kb on - strand, within LU632_RS00205 at 39.762 kb on - strand, within LU632_RS00205 at 39.762 kb on - strand, within LU632_RS00205 at 39.786 kb on + strand, within LU632_RS00205 at 39.983 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Experiment:TE2, Cucumber 6 Petiole 1 (TE2-S-C6-P1) remove 37,953 + -0.2 37,954 - +0.6 37,954 - +0.4 38,003 + -1.3 38,004 - +0.2 38,039 - -3.7 38,091 - -0.4 38,094 + -0.9 38,095 - +3.6 38,127 + +1.0 38,127 + -1.0 38,128 - -1.0 38,128 - +0.5 38,149 + +2.2 38,149 + -0.6 38,150 - -1.6 38,255 - LU632_RS00195 0.19 +1.0 38,280 + LU632_RS00195 0.21 -2.4 38,324 - LU632_RS00195 0.26 -1.0 38,324 - LU632_RS00195 0.26 +2.6 38,324 - LU632_RS00195 0.26 -0.4 38,344 + LU632_RS00195 0.28 +0.5 38,345 - LU632_RS00195 0.28 +0.4 38,346 + LU632_RS00195 0.28 -1.7 38,390 + LU632_RS00195 0.32 +0.1 38,390 + LU632_RS00195 0.32 +0.2 38,391 - LU632_RS00195 0.32 +1.2 38,415 - LU632_RS00195 0.35 +1.0 38,415 - LU632_RS00195 0.35 -0.8 38,450 + LU632_RS00195 0.38 -0.2 38,608 + LU632_RS00195 0.54 -0.7 38,609 - LU632_RS00195 0.54 -1.8 38,612 + LU632_RS00195 0.55 +0.4 38,613 - LU632_RS00195 0.55 +2.9 38,616 - LU632_RS00195 0.55 -1.1 38,777 + LU632_RS00195 0.71 -0.1 38,777 + LU632_RS00195 0.71 -3.2 38,784 - LU632_RS00195 0.72 +2.0 38,784 - LU632_RS00195 0.72 -2.0 38,886 - LU632_RS00195 0.82 -0.2 38,975 - +1.9 39,053 + -2.6 39,054 - -1.4 39,054 - +2.5 39,085 - +2.4 39,085 - -1.4 39,203 + LU632_RS00200 0.39 +2.3 39,204 - LU632_RS00200 0.40 -1.0 39,204 - LU632_RS00200 0.40 +0.6 39,307 - LU632_RS00200 0.67 +0.8 39,567 + LU632_RS00205 0.19 +0.7 39,567 + LU632_RS00205 0.19 +0.8 39,568 - LU632_RS00205 0.19 -1.2 39,594 + LU632_RS00205 0.24 -1.0 39,747 + LU632_RS00205 0.52 -1.1 39,748 - LU632_RS00205 0.53 -0.4 39,748 - LU632_RS00205 0.53 -0.6 39,749 + LU632_RS00205 0.53 -0.8 39,750 - LU632_RS00205 0.53 +0.2 39,750 - LU632_RS00205 0.53 +0.6 39,750 - LU632_RS00205 0.53 -2.2 39,750 - LU632_RS00205 0.53 -0.4 39,762 - LU632_RS00205 0.55 -3.7 39,762 - LU632_RS00205 0.55 +0.2 39,786 + LU632_RS00205 0.60 +1.2 39,983 - +1.3
Or see this region's nucleotide sequence