Experiment: Pectin from citrus peel; autoclaved 2.5 mg/mL (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1181_RS07370 and HMPREF1181_RS07375 are separated by 29 nucleotides HMPREF1181_RS07375 and HMPREF1181_RS07380 are separated by 75 nucleotides HMPREF1181_RS07380 and HMPREF1181_RS07385 are separated by 355 nucleotides
HMPREF1181_RS07370: HMPREF1181_RS07370 - sugar O-acetyltransferase, at 849,902 to 850,462
_RS07370
HMPREF1181_RS07375: HMPREF1181_RS07375 - HAD family phosphatase, at 850,492 to 851,124
_RS07375
HMPREF1181_RS07380: HMPREF1181_RS07380 - carbamoyl-phosphate synthase (glutamine-hydrolyzing) large subunit, at 851,200 to 854,427
_RS07380
HMPREF1181_RS07385: HMPREF1181_RS07385 - hypothetical protein, at 854,783 to 855,922
_RS07385
Position (kb) 851
852
853
854
855 Strain fitness (log2 ratio) -2
-1
0
1 at 850.207 kb on + strand, within HMPREF1181_RS07370 at 850.222 kb on + strand, within HMPREF1181_RS07370 at 850.354 kb on + strand, within HMPREF1181_RS07370 at 850.390 kb on + strand, within HMPREF1181_RS07370 at 850.489 kb on - strand at 850.493 kb on + strand at 850.493 kb on + strand at 850.504 kb on - strand at 850.507 kb on + strand at 850.507 kb on + strand at 850.507 kb on + strand at 850.508 kb on - strand at 850.608 kb on + strand, within HMPREF1181_RS07375 at 850.688 kb on + strand, within HMPREF1181_RS07375 at 850.794 kb on + strand, within HMPREF1181_RS07375 at 850.794 kb on + strand, within HMPREF1181_RS07375 at 850.795 kb on - strand, within HMPREF1181_RS07375 at 850.874 kb on - strand, within HMPREF1181_RS07375 at 850.874 kb on - strand, within HMPREF1181_RS07375 at 850.981 kb on + strand, within HMPREF1181_RS07375 at 851.108 kb on - strand at 851.112 kb on + strand at 851.184 kb on + strand at 851.187 kb on + strand at 851.188 kb on - strand at 851.188 kb on - strand at 851.189 kb on + strand at 851.189 kb on + strand at 851.206 kb on - strand at 851.307 kb on + strand at 851.337 kb on - strand at 851.380 kb on + strand at 851.397 kb on + strand at 851.398 kb on - strand at 851.398 kb on - strand at 851.419 kb on + strand at 851.419 kb on + strand at 851.420 kb on - strand at 851.474 kb on - strand at 851.516 kb on + strand at 851.516 kb on + strand at 851.687 kb on - strand, within HMPREF1181_RS07380 at 851.697 kb on + strand, within HMPREF1181_RS07380 at 851.706 kb on + strand, within HMPREF1181_RS07380 at 851.707 kb on - strand, within HMPREF1181_RS07380 at 851.814 kb on - strand, within HMPREF1181_RS07380 at 851.856 kb on + strand, within HMPREF1181_RS07380 at 851.935 kb on - strand, within HMPREF1181_RS07380 at 851.935 kb on - strand, within HMPREF1181_RS07380 at 852.009 kb on + strand, within HMPREF1181_RS07380 at 852.108 kb on - strand, within HMPREF1181_RS07380 at 852.108 kb on - strand, within HMPREF1181_RS07380 at 852.159 kb on + strand, within HMPREF1181_RS07380 at 852.253 kb on + strand, within HMPREF1181_RS07380 at 852.254 kb on - strand, within HMPREF1181_RS07380 at 852.281 kb on + strand, within HMPREF1181_RS07380 at 852.409 kb on - strand, within HMPREF1181_RS07380 at 852.471 kb on - strand, within HMPREF1181_RS07380 at 852.544 kb on + strand, within HMPREF1181_RS07380 at 852.600 kb on + strand, within HMPREF1181_RS07380 at 852.616 kb on + strand, within HMPREF1181_RS07380 at 852.632 kb on + strand, within HMPREF1181_RS07380 at 852.770 kb on + strand, within HMPREF1181_RS07380 at 852.770 kb on + strand, within HMPREF1181_RS07380 at 852.797 kb on + strand, within HMPREF1181_RS07380 at 852.805 kb on - strand, within HMPREF1181_RS07380 at 852.806 kb on + strand, within HMPREF1181_RS07380 at 852.812 kb on + strand, within HMPREF1181_RS07380 at 852.924 kb on + strand, within HMPREF1181_RS07380 at 853.023 kb on + strand, within HMPREF1181_RS07380 at 853.023 kb on + strand, within HMPREF1181_RS07380 at 853.044 kb on + strand, within HMPREF1181_RS07380 at 853.045 kb on - strand, within HMPREF1181_RS07380 at 853.046 kb on + strand, within HMPREF1181_RS07380 at 853.051 kb on + strand, within HMPREF1181_RS07380 at 853.052 kb on - strand, within HMPREF1181_RS07380 at 853.052 kb on - strand, within HMPREF1181_RS07380 at 853.120 kb on - strand, within HMPREF1181_RS07380 at 853.120 kb on - strand, within HMPREF1181_RS07380 at 853.243 kb on + strand, within HMPREF1181_RS07380 at 853.248 kb on + strand, within HMPREF1181_RS07380 at 853.248 kb on + strand, within HMPREF1181_RS07380 at 853.248 kb on + strand, within HMPREF1181_RS07380 at 853.248 kb on + strand, within HMPREF1181_RS07380 at 853.362 kb on - strand, within HMPREF1181_RS07380 at 853.420 kb on - strand, within HMPREF1181_RS07380 at 853.452 kb on + strand, within HMPREF1181_RS07380 at 853.453 kb on - strand, within HMPREF1181_RS07380 at 853.587 kb on - strand, within HMPREF1181_RS07380 at 853.741 kb on - strand, within HMPREF1181_RS07380 at 853.748 kb on - strand, within HMPREF1181_RS07380 at 853.920 kb on - strand, within HMPREF1181_RS07380 at 853.920 kb on - strand, within HMPREF1181_RS07380 at 854.060 kb on + strand, within HMPREF1181_RS07380 at 854.083 kb on - strand, within HMPREF1181_RS07380 at 854.428 kb on - strand at 854.435 kb on + strand at 854.446 kb on + strand at 854.509 kb on + strand at 854.582 kb on - strand at 854.582 kb on - strand at 854.587 kb on - strand at 854.588 kb on + strand at 854.588 kb on + strand at 854.588 kb on + strand at 854.592 kb on + strand at 854.617 kb on - strand at 854.617 kb on - strand at 854.642 kb on + strand at 854.692 kb on - strand at 854.708 kb on + strand at 854.749 kb on - strand at 854.759 kb on + strand at 854.761 kb on + strand at 854.771 kb on + strand at 854.772 kb on - strand at 854.773 kb on + strand at 854.774 kb on - strand at 854.830 kb on + strand at 854.831 kb on - strand at 854.831 kb on - strand at 854.838 kb on + strand at 854.838 kb on + strand at 854.839 kb on - strand at 854.995 kb on - strand, within HMPREF1181_RS07385 at 855.014 kb on - strand, within HMPREF1181_RS07385 at 855.014 kb on - strand, within HMPREF1181_RS07385 at 855.030 kb on - strand, within HMPREF1181_RS07385 at 855.298 kb on + strand, within HMPREF1181_RS07385 at 855.397 kb on - strand, within HMPREF1181_RS07385 at 855.397 kb on - strand, within HMPREF1181_RS07385 at 855.398 kb on + strand, within HMPREF1181_RS07385 at 855.398 kb on + strand, within HMPREF1181_RS07385 at 855.398 kb on + strand, within HMPREF1181_RS07385 at 855.401 kb on - strand, within HMPREF1181_RS07385 at 855.401 kb on - strand, within HMPREF1181_RS07385 at 855.401 kb on - strand, within HMPREF1181_RS07385
Per-strain Table
Position Strand Gene LocusTag Fraction Pectin from citrus peel; autoclaved 2.5 mg/mL (C) remove 850,207 + HMPREF1181_RS07370 0.54 -0.7 850,222 + HMPREF1181_RS07370 0.57 +0.1 850,354 + HMPREF1181_RS07370 0.81 -0.5 850,390 + HMPREF1181_RS07370 0.87 -1.4 850,489 - -1.1 850,493 + +0.4 850,493 + +1.7 850,504 - -0.3 850,507 + -0.5 850,507 + +0.8 850,507 + -0.1 850,508 - +0.2 850,608 + HMPREF1181_RS07375 0.18 -0.7 850,688 + HMPREF1181_RS07375 0.31 -0.4 850,794 + HMPREF1181_RS07375 0.48 -0.1 850,794 + HMPREF1181_RS07375 0.48 -0.3 850,795 - HMPREF1181_RS07375 0.48 -0.1 850,874 - HMPREF1181_RS07375 0.60 -1.0 850,874 - HMPREF1181_RS07375 0.60 -0.0 850,981 + HMPREF1181_RS07375 0.77 -0.0 851,108 - -0.5 851,112 + -0.5 851,184 + -0.6 851,187 + +0.4 851,188 - +0.5 851,188 - -0.1 851,189 + -1.2 851,189 + -0.3 851,206 - -0.7 851,307 + -0.1 851,337 - +0.5 851,380 + -0.9 851,397 + -0.8 851,398 - -0.0 851,398 - -0.9 851,419 + -1.7 851,419 + -1.5 851,420 - -0.9 851,474 - -1.2 851,516 + -0.6 851,516 + -0.9 851,687 - HMPREF1181_RS07380 0.15 +0.4 851,697 + HMPREF1181_RS07380 0.15 -0.1 851,706 + HMPREF1181_RS07380 0.16 -0.1 851,707 - HMPREF1181_RS07380 0.16 +0.1 851,814 - HMPREF1181_RS07380 0.19 -0.3 851,856 + HMPREF1181_RS07380 0.20 -0.8 851,935 - HMPREF1181_RS07380 0.23 -1.0 851,935 - HMPREF1181_RS07380 0.23 -0.8 852,009 + HMPREF1181_RS07380 0.25 -0.1 852,108 - HMPREF1181_RS07380 0.28 -0.9 852,108 - HMPREF1181_RS07380 0.28 +0.2 852,159 + HMPREF1181_RS07380 0.30 +0.1 852,253 + HMPREF1181_RS07380 0.33 -0.5 852,254 - HMPREF1181_RS07380 0.33 +0.2 852,281 + HMPREF1181_RS07380 0.33 -0.2 852,409 - HMPREF1181_RS07380 0.37 +0.6 852,471 - HMPREF1181_RS07380 0.39 -1.0 852,544 + HMPREF1181_RS07380 0.42 -1.3 852,600 + HMPREF1181_RS07380 0.43 -1.6 852,616 + HMPREF1181_RS07380 0.44 +0.2 852,632 + HMPREF1181_RS07380 0.44 +0.3 852,770 + HMPREF1181_RS07380 0.49 -0.5 852,770 + HMPREF1181_RS07380 0.49 -0.1 852,797 + HMPREF1181_RS07380 0.49 +0.1 852,805 - HMPREF1181_RS07380 0.50 -0.9 852,806 + HMPREF1181_RS07380 0.50 -0.1 852,812 + HMPREF1181_RS07380 0.50 -1.1 852,924 + HMPREF1181_RS07380 0.53 +1.7 853,023 + HMPREF1181_RS07380 0.56 +0.3 853,023 + HMPREF1181_RS07380 0.56 -1.0 853,044 + HMPREF1181_RS07380 0.57 -0.3 853,045 - HMPREF1181_RS07380 0.57 -0.1 853,046 + HMPREF1181_RS07380 0.57 -0.6 853,051 + HMPREF1181_RS07380 0.57 +0.1 853,052 - HMPREF1181_RS07380 0.57 -0.9 853,052 - HMPREF1181_RS07380 0.57 -0.4 853,120 - HMPREF1181_RS07380 0.59 -0.8 853,120 - HMPREF1181_RS07380 0.59 -0.3 853,243 + HMPREF1181_RS07380 0.63 -1.9 853,248 + HMPREF1181_RS07380 0.63 -0.5 853,248 + HMPREF1181_RS07380 0.63 -1.2 853,248 + HMPREF1181_RS07380 0.63 -0.2 853,248 + HMPREF1181_RS07380 0.63 -0.8 853,362 - HMPREF1181_RS07380 0.67 -0.5 853,420 - HMPREF1181_RS07380 0.69 +0.5 853,452 + HMPREF1181_RS07380 0.70 -0.8 853,453 - HMPREF1181_RS07380 0.70 -1.1 853,587 - HMPREF1181_RS07380 0.74 -1.7 853,741 - HMPREF1181_RS07380 0.79 +1.7 853,748 - HMPREF1181_RS07380 0.79 -0.2 853,920 - HMPREF1181_RS07380 0.84 -0.1 853,920 - HMPREF1181_RS07380 0.84 -0.1 854,060 + HMPREF1181_RS07380 0.89 -0.7 854,083 - HMPREF1181_RS07380 0.89 -0.8 854,428 - -0.8 854,435 + -0.2 854,446 + -0.0 854,509 + -0.8 854,582 - +0.5 854,582 - +0.5 854,587 - -0.8 854,588 + +0.0 854,588 + -1.0 854,588 + -1.0 854,592 + -2.3 854,617 - -0.4 854,617 - -0.1 854,642 + +0.1 854,692 - +0.1 854,708 + +0.4 854,749 - -0.3 854,759 + +0.3 854,761 + -0.0 854,771 + -0.8 854,772 - -0.0 854,773 + -0.8 854,774 - +0.2 854,830 + -0.1 854,831 - +0.0 854,831 - +0.2 854,838 + -0.5 854,838 + -0.2 854,839 - +0.8 854,995 - HMPREF1181_RS07385 0.19 +0.2 855,014 - HMPREF1181_RS07385 0.20 -0.2 855,014 - HMPREF1181_RS07385 0.20 +0.2 855,030 - HMPREF1181_RS07385 0.22 -0.5 855,298 + HMPREF1181_RS07385 0.45 +0.6 855,397 - HMPREF1181_RS07385 0.54 +0.3 855,397 - HMPREF1181_RS07385 0.54 +0.7 855,398 + HMPREF1181_RS07385 0.54 +0.7 855,398 + HMPREF1181_RS07385 0.54 +0.2 855,398 + HMPREF1181_RS07385 0.54 -2.5 855,401 - HMPREF1181_RS07385 0.54 -1.7 855,401 - HMPREF1181_RS07385 0.54 +0.4 855,401 - HMPREF1181_RS07385 0.54 +0.6
Or see this region's nucleotide sequence