Strain Fitness in Bacteroides stercoris CC31F around HMPREF1181_RS15295

Experiment: Amylose from potato 2.5 mg/mL (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntHMPREF1181_RS15290 and HMPREF1181_RS15295 are separated by 346 nucleotidesHMPREF1181_RS15295 and HMPREF1181_RS15300 are separated by 31 nucleotides HMPREF1181_RS15290: HMPREF1181_RS15290 - PorT family protein, at 263,513 to 264,190 _RS15290 HMPREF1181_RS15295: HMPREF1181_RS15295 - ion transporter, at 264,537 to 265,274 _RS15295 HMPREF1181_RS15300: HMPREF1181_RS15300 - PorT family protein, at 265,306 to 265,941 _RS15300 Position (kb) 264 265 266Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 263.564 kb on + strandat 263.564 kb on + strandat 263.564 kb on + strandat 263.580 kb on - strandat 263.580 kb on - strandat 263.614 kb on + strand, within HMPREF1181_RS15290at 263.649 kb on + strand, within HMPREF1181_RS15290at 263.649 kb on + strand, within HMPREF1181_RS15290at 263.649 kb on + strand, within HMPREF1181_RS15290at 263.650 kb on - strand, within HMPREF1181_RS15290at 263.675 kb on + strand, within HMPREF1181_RS15290at 263.759 kb on + strand, within HMPREF1181_RS15290at 263.766 kb on - strand, within HMPREF1181_RS15290at 263.802 kb on - strand, within HMPREF1181_RS15290at 263.855 kb on + strand, within HMPREF1181_RS15290at 263.907 kb on - strand, within HMPREF1181_RS15290at 263.933 kb on - strand, within HMPREF1181_RS15290at 263.938 kb on + strand, within HMPREF1181_RS15290at 263.961 kb on + strand, within HMPREF1181_RS15290at 263.962 kb on - strand, within HMPREF1181_RS15290at 263.962 kb on - strand, within HMPREF1181_RS15290at 264.150 kb on - strandat 264.205 kb on + strandat 264.212 kb on - strandat 264.296 kb on - strandat 264.316 kb on - strandat 264.611 kb on + strand, within HMPREF1181_RS15295at 264.688 kb on - strand, within HMPREF1181_RS15295at 264.691 kb on + strand, within HMPREF1181_RS15295at 264.717 kb on + strand, within HMPREF1181_RS15295at 264.718 kb on - strand, within HMPREF1181_RS15295at 264.718 kb on - strand, within HMPREF1181_RS15295at 264.751 kb on - strand, within HMPREF1181_RS15295at 264.751 kb on - strand, within HMPREF1181_RS15295at 264.821 kb on - strand, within HMPREF1181_RS15295at 264.836 kb on + strand, within HMPREF1181_RS15295at 264.850 kb on + strand, within HMPREF1181_RS15295at 264.851 kb on - strand, within HMPREF1181_RS15295at 264.853 kb on - strand, within HMPREF1181_RS15295at 264.987 kb on + strand, within HMPREF1181_RS15295at 264.987 kb on + strand, within HMPREF1181_RS15295at 264.987 kb on + strand, within HMPREF1181_RS15295at 264.987 kb on + strand, within HMPREF1181_RS15295at 264.988 kb on - strand, within HMPREF1181_RS15295at 264.990 kb on - strand, within HMPREF1181_RS15295at 264.990 kb on - strand, within HMPREF1181_RS15295at 264.990 kb on - strand, within HMPREF1181_RS15295at 265.037 kb on + strand, within HMPREF1181_RS15295at 265.087 kb on + strand, within HMPREF1181_RS15295at 265.117 kb on + strand, within HMPREF1181_RS15295at 265.169 kb on + strand, within HMPREF1181_RS15295at 265.170 kb on - strand, within HMPREF1181_RS15295at 265.242 kb on - strandat 265.297 kb on - strandat 265.297 kb on - strandat 265.298 kb on + strandat 265.298 kb on + strandat 265.379 kb on + strand, within HMPREF1181_RS15300at 265.535 kb on - strand, within HMPREF1181_RS15300at 265.554 kb on + strand, within HMPREF1181_RS15300at 265.555 kb on - strand, within HMPREF1181_RS15300at 265.616 kb on + strand, within HMPREF1181_RS15300at 265.617 kb on - strand, within HMPREF1181_RS15300at 265.617 kb on - strand, within HMPREF1181_RS15300at 265.652 kb on + strand, within HMPREF1181_RS15300at 265.672 kb on + strand, within HMPREF1181_RS15300at 265.672 kb on + strand, within HMPREF1181_RS15300at 265.673 kb on - strand, within HMPREF1181_RS15300at 265.740 kb on - strand, within HMPREF1181_RS15300at 265.786 kb on + strand, within HMPREF1181_RS15300at 265.848 kb on - strand, within HMPREF1181_RS15300at 265.931 kb on - strandat 265.945 kb on + strandat 265.945 kb on + strandat 265.958 kb on + strandat 266.015 kb on + strandat 266.015 kb on + strandat 266.016 kb on - strandat 266.019 kb on + strandat 266.019 kb on + strandat 266.054 kb on + strandat 266.152 kb on - strandat 266.165 kb on + strandat 266.173 kb on - strandat 266.192 kb on + strandat 266.192 kb on + strandat 266.192 kb on + strandat 266.213 kb on + strandat 266.270 kb on + strandat 266.270 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Amylose from potato 2.5 mg/mL (C)
remove
263,564 + +0.7
263,564 + +0.5
263,564 + +0.7
263,580 - +1.4
263,580 - +1.3
263,614 + HMPREF1181_RS15290 0.15 -0.5
263,649 + HMPREF1181_RS15290 0.20 -4.0
263,649 + HMPREF1181_RS15290 0.20 +0.2
263,649 + HMPREF1181_RS15290 0.20 +0.3
263,650 - HMPREF1181_RS15290 0.20 -0.8
263,675 + HMPREF1181_RS15290 0.24 +0.5
263,759 + HMPREF1181_RS15290 0.36 +0.6
263,766 - HMPREF1181_RS15290 0.37 +1.3
263,802 - HMPREF1181_RS15290 0.43 -0.9
263,855 + HMPREF1181_RS15290 0.50 -0.7
263,907 - HMPREF1181_RS15290 0.58 +1.0
263,933 - HMPREF1181_RS15290 0.62 +1.2
263,938 + HMPREF1181_RS15290 0.63 +1.7
263,961 + HMPREF1181_RS15290 0.66 +0.5
263,962 - HMPREF1181_RS15290 0.66 +1.4
263,962 - HMPREF1181_RS15290 0.66 +0.4
264,150 - +0.5
264,205 + +0.7
264,212 - -1.7
264,296 - -0.3
264,316 - +0.1
264,611 + HMPREF1181_RS15295 0.10 +0.1
264,688 - HMPREF1181_RS15295 0.20 +0.7
264,691 + HMPREF1181_RS15295 0.21 -0.1
264,717 + HMPREF1181_RS15295 0.24 -0.1
264,718 - HMPREF1181_RS15295 0.25 -1.4
264,718 - HMPREF1181_RS15295 0.25 +1.5
264,751 - HMPREF1181_RS15295 0.29 -0.7
264,751 - HMPREF1181_RS15295 0.29 +0.6
264,821 - HMPREF1181_RS15295 0.38 -1.1
264,836 + HMPREF1181_RS15295 0.41 +0.8
264,850 + HMPREF1181_RS15295 0.42 -0.9
264,851 - HMPREF1181_RS15295 0.43 -1.1
264,853 - HMPREF1181_RS15295 0.43 -0.2
264,987 + HMPREF1181_RS15295 0.61 +0.6
264,987 + HMPREF1181_RS15295 0.61 +1.0
264,987 + HMPREF1181_RS15295 0.61 -0.3
264,987 + HMPREF1181_RS15295 0.61 +0.7
264,988 - HMPREF1181_RS15295 0.61 +0.7
264,990 - HMPREF1181_RS15295 0.61 +0.8
264,990 - HMPREF1181_RS15295 0.61 -0.5
264,990 - HMPREF1181_RS15295 0.61 +0.9
265,037 + HMPREF1181_RS15295 0.68 +0.1
265,087 + HMPREF1181_RS15295 0.75 +0.9
265,117 + HMPREF1181_RS15295 0.79 -0.4
265,169 + HMPREF1181_RS15295 0.86 -0.9
265,170 - HMPREF1181_RS15295 0.86 +1.0
265,242 - +0.4
265,297 - -1.2
265,297 - -1.1
265,298 + +0.3
265,298 + +2.5
265,379 + HMPREF1181_RS15300 0.11 +1.1
265,535 - HMPREF1181_RS15300 0.36 -0.7
265,554 + HMPREF1181_RS15300 0.39 +0.6
265,555 - HMPREF1181_RS15300 0.39 +0.8
265,616 + HMPREF1181_RS15300 0.49 +1.0
265,617 - HMPREF1181_RS15300 0.49 -0.5
265,617 - HMPREF1181_RS15300 0.49 +0.2
265,652 + HMPREF1181_RS15300 0.54 -0.7
265,672 + HMPREF1181_RS15300 0.58 +1.8
265,672 + HMPREF1181_RS15300 0.58 -0.7
265,673 - HMPREF1181_RS15300 0.58 +0.5
265,740 - HMPREF1181_RS15300 0.68 -0.8
265,786 + HMPREF1181_RS15300 0.75 -1.6
265,848 - HMPREF1181_RS15300 0.85 -0.3
265,931 - -1.3
265,945 + -0.4
265,945 + -4.1
265,958 + +1.7
266,015 + +0.8
266,015 + -1.4
266,016 - -0.4
266,019 + +1.2
266,019 + +0.3
266,054 + +2.0
266,152 - +0.8
266,165 + -0.8
266,173 - -0.3
266,192 + +1.3
266,192 + +0.3
266,192 + -1.0
266,213 + -1.0
266,270 + -0.6
266,270 + +1.1

Or see this region's nucleotide sequence