Experiment: Amylose from potato 2.5 mg/mL (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1181_RS12300 and HMPREF1181_RS12305 overlap by 1 nucleotides HMPREF1181_RS12305 and HMPREF1181_RS12310 are separated by 49 nucleotides HMPREF1181_RS12310 and HMPREF1181_RS18110 are separated by 45 nucleotides HMPREF1181_RS18110 and HMPREF1181_RS12315 are separated by 25 nucleotides
HMPREF1181_RS12300: HMPREF1181_RS12300 - ATP-binding protein, at 457,661 to 458,710
_RS12300
HMPREF1181_RS12305: HMPREF1181_RS12305 - kinase, at 458,710 to 459,177
_RS12305
HMPREF1181_RS12310: HMPREF1181_RS12310 - hypothetical protein, at 459,227 to 459,547
_RS12310
HMPREF1181_RS18110: HMPREF1181_RS18110 - hypothetical protein, at 459,593 to 459,766
_RS18110
HMPREF1181_RS12315: HMPREF1181_RS12315 - calcium-translocating P-type ATPase, PMCA-type, at 459,792 to 462,482
_RS12315
Position (kb) 459
460 Strain fitness (log2 ratio) -2
-1
0
1
2 at 458.302 kb on + strand, within HMPREF1181_RS12300 at 458.303 kb on - strand, within HMPREF1181_RS12300 at 458.327 kb on - strand, within HMPREF1181_RS12300 at 458.331 kb on - strand, within HMPREF1181_RS12300 at 458.358 kb on - strand, within HMPREF1181_RS12300 at 458.378 kb on - strand, within HMPREF1181_RS12300 at 458.381 kb on - strand, within HMPREF1181_RS12300 at 458.453 kb on + strand, within HMPREF1181_RS12300 at 458.465 kb on - strand, within HMPREF1181_RS12300 at 458.550 kb on - strand, within HMPREF1181_RS12300 at 458.570 kb on - strand, within HMPREF1181_RS12300 at 458.600 kb on + strand, within HMPREF1181_RS12300 at 458.601 kb on - strand, within HMPREF1181_RS12300 at 458.706 kb on - strand at 458.796 kb on + strand, within HMPREF1181_RS12305 at 458.822 kb on - strand, within HMPREF1181_RS12305 at 458.854 kb on + strand, within HMPREF1181_RS12305 at 458.905 kb on + strand, within HMPREF1181_RS12305 at 458.925 kb on + strand, within HMPREF1181_RS12305 at 458.926 kb on - strand, within HMPREF1181_RS12305 at 458.948 kb on + strand, within HMPREF1181_RS12305 at 459.091 kb on + strand, within HMPREF1181_RS12305 at 459.092 kb on - strand, within HMPREF1181_RS12305 at 459.120 kb on - strand, within HMPREF1181_RS12305 at 459.187 kb on - strand at 459.195 kb on - strand at 459.218 kb on + strand at 459.218 kb on + strand at 459.265 kb on - strand, within HMPREF1181_RS12310 at 459.274 kb on - strand, within HMPREF1181_RS12310 at 459.328 kb on - strand, within HMPREF1181_RS12310 at 459.350 kb on + strand, within HMPREF1181_RS12310 at 459.351 kb on - strand, within HMPREF1181_RS12310 at 459.382 kb on - strand, within HMPREF1181_RS12310 at 459.423 kb on + strand, within HMPREF1181_RS12310 at 459.448 kb on - strand, within HMPREF1181_RS12310 at 459.521 kb on - strand at 459.586 kb on + strand at 459.587 kb on - strand at 459.593 kb on - strand at 459.754 kb on - strand at 459.790 kb on - strand at 459.855 kb on + strand at 459.932 kb on + strand at 459.933 kb on - strand at 460.067 kb on - strand, within HMPREF1181_RS12315 at 460.108 kb on + strand, within HMPREF1181_RS12315 at 460.111 kb on + strand, within HMPREF1181_RS12315 at 460.112 kb on - strand, within HMPREF1181_RS12315 at 460.135 kb on + strand, within HMPREF1181_RS12315 at 460.211 kb on + strand, within HMPREF1181_RS12315 at 460.259 kb on + strand, within HMPREF1181_RS12315 at 460.308 kb on - strand, within HMPREF1181_RS12315 at 460.347 kb on + strand, within HMPREF1181_RS12315 at 460.352 kb on + strand, within HMPREF1181_RS12315 at 460.398 kb on - strand, within HMPREF1181_RS12315
Per-strain Table
Position Strand Gene LocusTag Fraction Amylose from potato 2.5 mg/mL (C) remove 458,302 + HMPREF1181_RS12300 0.61 -1.9 458,303 - HMPREF1181_RS12300 0.61 +0.5 458,327 - HMPREF1181_RS12300 0.63 +0.3 458,331 - HMPREF1181_RS12300 0.64 +0.1 458,358 - HMPREF1181_RS12300 0.66 -0.1 458,378 - HMPREF1181_RS12300 0.68 +0.1 458,381 - HMPREF1181_RS12300 0.69 -0.3 458,453 + HMPREF1181_RS12300 0.75 -1.2 458,465 - HMPREF1181_RS12300 0.77 -0.6 458,550 - HMPREF1181_RS12300 0.85 +1.3 458,570 - HMPREF1181_RS12300 0.87 +0.7 458,600 + HMPREF1181_RS12300 0.89 +0.9 458,601 - HMPREF1181_RS12300 0.90 -0.3 458,706 - -0.3 458,796 + HMPREF1181_RS12305 0.18 +0.1 458,822 - HMPREF1181_RS12305 0.24 +0.6 458,854 + HMPREF1181_RS12305 0.31 +1.0 458,905 + HMPREF1181_RS12305 0.42 -0.6 458,925 + HMPREF1181_RS12305 0.46 +2.5 458,926 - HMPREF1181_RS12305 0.46 -0.4 458,948 + HMPREF1181_RS12305 0.51 +0.2 459,091 + HMPREF1181_RS12305 0.81 +0.3 459,092 - HMPREF1181_RS12305 0.82 -1.3 459,120 - HMPREF1181_RS12305 0.88 -0.6 459,187 - +1.0 459,195 - -1.2 459,218 + +1.7 459,218 + +0.9 459,265 - HMPREF1181_RS12310 0.12 -0.4 459,274 - HMPREF1181_RS12310 0.15 +0.6 459,328 - HMPREF1181_RS12310 0.31 +0.8 459,350 + HMPREF1181_RS12310 0.38 -0.2 459,351 - HMPREF1181_RS12310 0.39 -0.6 459,382 - HMPREF1181_RS12310 0.48 +0.7 459,423 + HMPREF1181_RS12310 0.61 +1.9 459,448 - HMPREF1181_RS12310 0.69 -0.9 459,521 - -0.5 459,586 + -0.1 459,587 - +0.2 459,593 - -0.1 459,754 - +2.6 459,790 - +0.9 459,855 + +0.2 459,932 + +0.6 459,933 - +0.2 460,067 - HMPREF1181_RS12315 0.10 +0.9 460,108 + HMPREF1181_RS12315 0.12 +1.2 460,111 + HMPREF1181_RS12315 0.12 -0.0 460,112 - HMPREF1181_RS12315 0.12 -0.7 460,135 + HMPREF1181_RS12315 0.13 -0.9 460,211 + HMPREF1181_RS12315 0.16 -0.0 460,259 + HMPREF1181_RS12315 0.17 -2.0 460,308 - HMPREF1181_RS12315 0.19 -0.6 460,347 + HMPREF1181_RS12315 0.21 +0.1 460,352 + HMPREF1181_RS12315 0.21 +1.1 460,398 - HMPREF1181_RS12315 0.23 -0.9
Or see this region's nucleotide sequence