Experiment: Amylose from potato 2.5 mg/mL (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1181_RS03430 and HMPREF1181_RS03435 are separated by 41 nucleotides HMPREF1181_RS03435 and HMPREF1181_RS03440 are separated by 28 nucleotides HMPREF1181_RS03440 and HMPREF1181_RS03445 are separated by 123 nucleotides
HMPREF1181_RS03430: HMPREF1181_RS03430 - AMP-binding protein, at 869,850 to 871,505
_RS03430
HMPREF1181_RS03435: HMPREF1181_RS03435 - cupin domain-containing protein, at 871,547 to 872,101
_RS03435
HMPREF1181_RS03440: HMPREF1181_RS03440 - pyrroline-5-carboxylate reductase, at 872,130 to 872,903
_RS03440
HMPREF1181_RS03445: HMPREF1181_RS03445 - aspartate aminotransferase family protein, at 873,027 to 874,148
_RS03445
Position (kb) 871
872
873 Strain fitness (log2 ratio) -6
-5
-4
-3
-2
-1
0
1 at 870.583 kb on + strand, within HMPREF1181_RS03430 at 870.653 kb on - strand, within HMPREF1181_RS03430 at 870.705 kb on + strand, within HMPREF1181_RS03430 at 871.131 kb on + strand, within HMPREF1181_RS03430 at 871.137 kb on - strand, within HMPREF1181_RS03430 at 871.137 kb on - strand, within HMPREF1181_RS03430 at 871.242 kb on + strand, within HMPREF1181_RS03430 at 871.298 kb on + strand, within HMPREF1181_RS03430 at 871.408 kb on + strand at 871.473 kb on - strand at 871.571 kb on + strand at 871.571 kb on + strand at 871.725 kb on + strand, within HMPREF1181_RS03435 at 871.725 kb on + strand, within HMPREF1181_RS03435 at 871.816 kb on - strand, within HMPREF1181_RS03435 at 871.819 kb on + strand, within HMPREF1181_RS03435 at 871.821 kb on + strand, within HMPREF1181_RS03435 at 872.048 kb on + strand at 872.111 kb on - strand at 872.123 kb on - strand at 872.125 kb on + strand at 872.156 kb on + strand at 872.195 kb on + strand at 872.232 kb on - strand, within HMPREF1181_RS03440 at 872.366 kb on + strand, within HMPREF1181_RS03440 at 872.376 kb on + strand, within HMPREF1181_RS03440 at 872.377 kb on - strand, within HMPREF1181_RS03440 at 872.380 kb on + strand, within HMPREF1181_RS03440 at 872.381 kb on - strand, within HMPREF1181_RS03440 at 872.590 kb on + strand, within HMPREF1181_RS03440 at 872.591 kb on - strand, within HMPREF1181_RS03440 at 872.633 kb on + strand, within HMPREF1181_RS03440 at 872.637 kb on + strand, within HMPREF1181_RS03440 at 872.918 kb on + strand at 872.979 kb on + strand at 872.980 kb on - strand at 872.980 kb on - strand at 872.980 kb on - strand at 873.021 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Amylose from potato 2.5 mg/mL (C) remove 870,583 + HMPREF1181_RS03430 0.44 -0.4 870,653 - HMPREF1181_RS03430 0.48 +0.7 870,705 + HMPREF1181_RS03430 0.52 +0.0 871,131 + HMPREF1181_RS03430 0.77 +0.6 871,137 - HMPREF1181_RS03430 0.78 +0.8 871,137 - HMPREF1181_RS03430 0.78 +0.9 871,242 + HMPREF1181_RS03430 0.84 +1.0 871,298 + HMPREF1181_RS03430 0.87 -2.0 871,408 + -0.9 871,473 - -0.4 871,571 + -0.7 871,571 + +0.5 871,725 + HMPREF1181_RS03435 0.32 -0.4 871,725 + HMPREF1181_RS03435 0.32 -0.1 871,816 - HMPREF1181_RS03435 0.48 -2.8 871,819 + HMPREF1181_RS03435 0.49 -0.6 871,821 + HMPREF1181_RS03435 0.49 +0.3 872,048 + +0.2 872,111 - -1.3 872,123 - -1.8 872,125 + +0.1 872,156 + -5.4 872,195 + -2.4 872,232 - HMPREF1181_RS03440 0.13 -5.1 872,366 + HMPREF1181_RS03440 0.30 -4.5 872,376 + HMPREF1181_RS03440 0.32 -2.8 872,377 - HMPREF1181_RS03440 0.32 -5.3 872,380 + HMPREF1181_RS03440 0.32 -1.4 872,381 - HMPREF1181_RS03440 0.32 -6.1 872,590 + HMPREF1181_RS03440 0.59 -5.3 872,591 - HMPREF1181_RS03440 0.60 -5.1 872,633 + HMPREF1181_RS03440 0.65 -4.8 872,637 + HMPREF1181_RS03440 0.66 -2.4 872,918 + -2.9 872,979 + -1.3 872,980 - -0.7 872,980 - +0.0 872,980 - -2.1 873,021 - -0.5
Or see this region's nucleotide sequence