Experiment: Amylose from potato 2.5 mg/mL (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1181_RS17225 and HMPREF1181_RS03360 are separated by 115 nucleotides HMPREF1181_RS03360 and HMPREF1181_RS03365 are separated by 57 nucleotides HMPREF1181_RS03365 and HMPREF1181_RS03370 are separated by 25 nucleotides
HMPREF1181_RS17225: HMPREF1181_RS17225 - IS5/IS1182 family transposase, at 855,551 to 855,754
_RS17225
HMPREF1181_RS03360: HMPREF1181_RS03360 - OmpH family outer membrane protein, at 855,870 to 856,376
_RS03360
HMPREF1181_RS03365: HMPREF1181_RS03365 - OmpH family outer membrane protein, at 856,434 to 856,949
_RS03365
HMPREF1181_RS03370: HMPREF1181_RS03370 - outer membrane protein assembly factor BamA, at 856,975 to 859,614
_RS03370
Position (kb) 856
857 Strain fitness (log2 ratio) -2
-1
0
1
2 at 855.840 kb on + strand at 855.841 kb on - strand at 855.872 kb on - strand at 856.470 kb on - strand at 856.470 kb on - strand at 856.473 kb on + strand at 856.474 kb on - strand at 856.474 kb on - strand at 856.530 kb on + strand, within HMPREF1181_RS03365 at 856.564 kb on - strand, within HMPREF1181_RS03365 at 856.642 kb on + strand, within HMPREF1181_RS03365 at 856.751 kb on - strand, within HMPREF1181_RS03365 at 856.862 kb on - strand, within HMPREF1181_RS03365 at 856.862 kb on - strand, within HMPREF1181_RS03365 at 856.936 kb on - strand at 856.950 kb on - strand at 856.977 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Amylose from potato 2.5 mg/mL (C) remove 855,840 + -0.7 855,841 - -0.4 855,872 - -0.0 856,470 - +1.9 856,470 - +0.5 856,473 + -0.3 856,474 - +0.3 856,474 - -0.0 856,530 + HMPREF1181_RS03365 0.19 +1.3 856,564 - HMPREF1181_RS03365 0.25 +0.1 856,642 + HMPREF1181_RS03365 0.40 +0.7 856,751 - HMPREF1181_RS03365 0.61 +2.0 856,862 - HMPREF1181_RS03365 0.83 -0.8 856,862 - HMPREF1181_RS03365 0.83 -1.3 856,936 - +1.1 856,950 - +1.2 856,977 - -2.6
Or see this region's nucleotide sequence