Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS26120

Experiment: Experiment:TE2, Cucumber 5 Main Stem (TE2-S-C5-MS)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntLU632_RS26110 and LU632_RS26115 overlap by 4 nucleotidesLU632_RS26115 and LU632_RS26120 are separated by 134 nucleotidesLU632_RS26120 and LU632_RS26125 overlap by 7 nucleotidesLU632_RS26125 and LU632_RS26130 are separated by 93 nucleotidesLU632_RS26130 and LU632_RS26135 are separated by 67 nucleotides LU632_RS26110: LU632_RS26110 - ParA family protein, at 26,965 to 27,588 _RS26110 LU632_RS26115: LU632_RS26115 - hypothetical protein, at 27,585 to 27,812 _RS26115 LU632_RS26120: LU632_RS26120 - WGR domain-containing protein, at 27,947 to 28,162 _RS26120 LU632_RS26125: LU632_RS26125 - DUF551 domain-containing protein, at 28,156 to 28,341 _RS26125 LU632_RS26130: LU632_RS26130 - hypothetical protein, at 28,435 to 28,794 _RS26130 LU632_RS26135: LU632_RS26135 - hypothetical protein, at 28,862 to 29,215 _RS26135 Position (kb) 27 28 29Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2 3at 27.003 kb on + strandat 27.004 kb on - strandat 27.015 kb on - strandat 27.134 kb on + strand, within LU632_RS26110at 27.135 kb on - strand, within LU632_RS26110at 27.135 kb on - strand, within LU632_RS26110at 27.215 kb on + strand, within LU632_RS26110at 27.215 kb on + strand, within LU632_RS26110at 27.215 kb on + strand, within LU632_RS26110at 27.215 kb on + strand, within LU632_RS26110at 27.216 kb on - strand, within LU632_RS26110at 27.216 kb on - strand, within LU632_RS26110at 27.216 kb on - strand, within LU632_RS26110at 27.216 kb on - strand, within LU632_RS26110at 27.216 kb on - strand, within LU632_RS26110at 27.477 kb on + strand, within LU632_RS26110at 27.477 kb on + strand, within LU632_RS26110at 27.477 kb on + strand, within LU632_RS26110at 27.478 kb on - strand, within LU632_RS26110at 27.478 kb on - strand, within LU632_RS26110at 27.478 kb on - strand, within LU632_RS26110at 27.478 kb on - strand, within LU632_RS26110at 27.478 kb on - strand, within LU632_RS26110at 27.478 kb on - strand, within LU632_RS26110at 27.478 kb on - strand, within LU632_RS26110at 27.521 kb on - strand, within LU632_RS26110at 27.928 kb on - strandat 27.935 kb on + strandat 27.936 kb on - strandat 27.946 kb on + strandat 27.947 kb on - strandat 27.947 kb on - strandat 27.968 kb on - strandat 27.977 kb on + strand, within LU632_RS26120at 28.032 kb on - strand, within LU632_RS26120at 28.159 kb on + strandat 28.160 kb on + strandat 28.160 kb on + strandat 28.161 kb on - strandat 28.161 kb on - strandat 28.161 kb on - strandat 28.198 kb on - strand, within LU632_RS26125at 28.204 kb on + strand, within LU632_RS26125at 28.204 kb on + strand, within LU632_RS26125at 28.204 kb on + strand, within LU632_RS26125at 28.204 kb on + strand, within LU632_RS26125at 28.205 kb on - strand, within LU632_RS26125at 28.205 kb on - strand, within LU632_RS26125at 28.205 kb on - strand, within LU632_RS26125at 28.205 kb on - strand, within LU632_RS26125at 28.205 kb on - strand, within LU632_RS26125at 28.205 kb on - strand, within LU632_RS26125at 28.262 kb on + strand, within LU632_RS26125at 28.263 kb on - strand, within LU632_RS26125at 28.303 kb on - strand, within LU632_RS26125at 28.546 kb on + strand, within LU632_RS26130at 28.546 kb on + strand, within LU632_RS26130at 28.546 kb on + strand, within LU632_RS26130at 28.547 kb on - strand, within LU632_RS26130at 28.547 kb on - strand, within LU632_RS26130at 28.547 kb on - strand, within LU632_RS26130at 28.547 kb on - strand, within LU632_RS26130at 28.547 kb on - strand, within LU632_RS26130at 28.547 kb on - strand, within LU632_RS26130at 28.547 kb on - strand, within LU632_RS26130at 28.548 kb on + strand, within LU632_RS26130at 28.548 kb on + strand, within LU632_RS26130at 28.548 kb on + strand, within LU632_RS26130at 28.548 kb on + strand, within LU632_RS26130at 28.548 kb on + strand, within LU632_RS26130at 28.549 kb on - strand, within LU632_RS26130at 28.549 kb on - strand, within LU632_RS26130at 28.549 kb on - strand, within LU632_RS26130at 28.549 kb on - strand, within LU632_RS26130at 28.549 kb on - strand, within LU632_RS26130at 28.549 kb on - strand, within LU632_RS26130at 28.549 kb on - strand, within LU632_RS26130at 28.549 kb on - strand, within LU632_RS26130at 28.549 kb on - strand, within LU632_RS26130at 28.596 kb on + strand, within LU632_RS26130at 28.596 kb on + strand, within LU632_RS26130at 28.652 kb on - strand, within LU632_RS26130at 28.674 kb on + strand, within LU632_RS26130at 28.675 kb on - strand, within LU632_RS26130at 28.684 kb on + strand, within LU632_RS26130at 28.685 kb on - strand, within LU632_RS26130at 28.786 kb on + strandat 28.786 kb on + strandat 28.786 kb on + strandat 28.786 kb on + strandat 28.787 kb on - strandat 28.787 kb on - strandat 28.813 kb on + strandat 28.871 kb on + strandat 28.871 kb on + strandat 28.872 kb on - strandat 28.872 kb on - strandat 28.872 kb on - strandat 28.956 kb on - strand, within LU632_RS26135at 29.034 kb on + strand, within LU632_RS26135at 29.034 kb on + strand, within LU632_RS26135at 29.034 kb on + strand, within LU632_RS26135at 29.034 kb on + strand, within LU632_RS26135at 29.077 kb on + strand, within LU632_RS26135at 29.078 kb on - strand, within LU632_RS26135at 29.078 kb on - strand, within LU632_RS26135at 29.080 kb on + strand, within LU632_RS26135at 29.081 kb on - strand, within LU632_RS26135at 29.125 kb on + strand, within LU632_RS26135at 29.126 kb on - strand, within LU632_RS26135at 29.126 kb on - strand, within LU632_RS26135at 29.126 kb on - strand, within LU632_RS26135

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Per-strain Table

Position Strand Gene LocusTag Fraction Experiment:TE2, Cucumber 5 Main Stem (TE2-S-C5-MS)
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27,003 + -3.7
27,004 - -3.1
27,015 - -1.0
27,134 + LU632_RS26110 0.27 -3.7
27,135 - LU632_RS26110 0.27 +0.0
27,135 - LU632_RS26110 0.27 -5.5
27,215 + LU632_RS26110 0.40 +1.8
27,215 + LU632_RS26110 0.40 -3.4
27,215 + LU632_RS26110 0.40 -2.8
27,215 + LU632_RS26110 0.40 -2.3
27,216 - LU632_RS26110 0.40 -2.3
27,216 - LU632_RS26110 0.40 -2.3
27,216 - LU632_RS26110 0.40 -2.6
27,216 - LU632_RS26110 0.40 -4.0
27,216 - LU632_RS26110 0.40 -1.0
27,477 + LU632_RS26110 0.82 -1.0
27,477 + LU632_RS26110 0.82 +1.6
27,477 + LU632_RS26110 0.82 -2.0
27,478 - LU632_RS26110 0.82 -3.8
27,478 - LU632_RS26110 0.82 +0.6
27,478 - LU632_RS26110 0.82 -4.1
27,478 - LU632_RS26110 0.82 -2.0
27,478 - LU632_RS26110 0.82 -2.3
27,478 - LU632_RS26110 0.82 -1.0
27,478 - LU632_RS26110 0.82 -2.8
27,521 - LU632_RS26110 0.89 -2.8
27,928 - +0.3
27,935 + -1.6
27,936 - +0.8
27,946 + -2.6
27,947 - -4.3
27,947 - +0.8
27,968 - +0.7
27,977 + LU632_RS26120 0.14 -1.9
28,032 - LU632_RS26120 0.39 -2.6
28,159 + -2.0
28,160 + -4.5
28,160 + +0.9
28,161 - +0.3
28,161 - -2.0
28,161 - +3.5
28,198 - LU632_RS26125 0.23 -2.3
28,204 + LU632_RS26125 0.26 +0.3
28,204 + LU632_RS26125 0.26 +0.4
28,204 + LU632_RS26125 0.26 -0.5
28,204 + LU632_RS26125 0.26 -1.7
28,205 - LU632_RS26125 0.26 -3.9
28,205 - LU632_RS26125 0.26 -2.3
28,205 - LU632_RS26125 0.26 -0.4
28,205 - LU632_RS26125 0.26 -2.3
28,205 - LU632_RS26125 0.26 +1.5
28,205 - LU632_RS26125 0.26 +1.2
28,262 + LU632_RS26125 0.57 -0.5
28,263 - LU632_RS26125 0.58 +3.7
28,303 - LU632_RS26125 0.79 -3.4
28,546 + LU632_RS26130 0.31 -3.4
28,546 + LU632_RS26130 0.31 -2.8
28,546 + LU632_RS26130 0.31 -1.9
28,547 - LU632_RS26130 0.31 +2.6
28,547 - LU632_RS26130 0.31 -4.4
28,547 - LU632_RS26130 0.31 +1.6
28,547 - LU632_RS26130 0.31 -5.1
28,547 - LU632_RS26130 0.31 -4.1
28,547 - LU632_RS26130 0.31 +1.5
28,547 - LU632_RS26130 0.31 -0.9
28,548 + LU632_RS26130 0.31 -3.3
28,548 + LU632_RS26130 0.31 -3.1
28,548 + LU632_RS26130 0.31 -1.0
28,548 + LU632_RS26130 0.31 -3.1
28,548 + LU632_RS26130 0.31 -1.0
28,549 - LU632_RS26130 0.32 -0.7
28,549 - LU632_RS26130 0.32 +1.2
28,549 - LU632_RS26130 0.32 -3.5
28,549 - LU632_RS26130 0.32 +0.6
28,549 - LU632_RS26130 0.32 -3.0
28,549 - LU632_RS26130 0.32 -5.0
28,549 - LU632_RS26130 0.32 +2.4
28,549 - LU632_RS26130 0.32 -3.4
28,549 - LU632_RS26130 0.32 -0.7
28,596 + LU632_RS26130 0.45 +0.8
28,596 + LU632_RS26130 0.45 -0.4
28,652 - LU632_RS26130 0.60 -4.1
28,674 + LU632_RS26130 0.66 -1.4
28,675 - LU632_RS26130 0.67 -0.3
28,684 + LU632_RS26130 0.69 -2.3
28,685 - LU632_RS26130 0.69 -4.1
28,786 + +0.7
28,786 + +0.7
28,786 + -2.0
28,786 + +2.2
28,787 - +0.8
28,787 - -4.2
28,813 + +1.3
28,871 + -3.3
28,871 + -2.6
28,872 - -1.6
28,872 - -1.6
28,872 - -3.7
28,956 - LU632_RS26135 0.27 -2.2
29,034 + LU632_RS26135 0.49 +0.8
29,034 + LU632_RS26135 0.49 +0.0
29,034 + LU632_RS26135 0.49 -2.5
29,034 + LU632_RS26135 0.49 +1.1
29,077 + LU632_RS26135 0.61 +0.0
29,078 - LU632_RS26135 0.61 -3.4
29,078 - LU632_RS26135 0.61 -0.1
29,080 + LU632_RS26135 0.62 -2.6
29,081 - LU632_RS26135 0.62 +1.0
29,125 + LU632_RS26135 0.74 -1.6
29,126 - LU632_RS26135 0.75 +0.2
29,126 - LU632_RS26135 0.75 -3.3
29,126 - LU632_RS26135 0.75 -0.6

Or see this region's nucleotide sequence