Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS26100

Experiment: Experiment:TE2, Cucumber 5 Main Stem (TE2-S-C5-MS)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntLU632_RS26090 and LU632_RS26095 overlap by 4 nucleotidesLU632_RS26095 and LU632_RS26100 are separated by 7 nucleotidesLU632_RS26100 and LU632_RS26105 are separated by 16 nucleotidesLU632_RS26105 and LU632_RS26110 are separated by 444 nucleotides LU632_RS26090: LU632_RS26090 - DUF2514 domain-containing protein, at 25,092 to 25,613 _RS26090 LU632_RS26095: LU632_RS26095 - lysozyme, at 25,610 to 26,035 _RS26095 LU632_RS26100: LU632_RS26100 - phage holin family protein, at 26,043 to 26,345 _RS26100 LU632_RS26105: LU632_RS26105 - hypothetical protein, at 26,362 to 26,520 _RS26105 LU632_RS26110: LU632_RS26110 - ParA family protein, at 26,965 to 27,588 _RS26110 Position (kb) 26 27Strain fitness (log2 ratio) -6 -5 -4 -3 -2 -1 0 1 2 3 4 5at 25.080 kb on + strandat 25.363 kb on - strand, within LU632_RS26090at 25.508 kb on + strand, within LU632_RS26090at 25.508 kb on + strand, within LU632_RS26090at 25.508 kb on + strand, within LU632_RS26090at 25.509 kb on - strand, within LU632_RS26090at 25.509 kb on - strand, within LU632_RS26090at 25.509 kb on - strand, within LU632_RS26090at 25.509 kb on - strand, within LU632_RS26090at 25.509 kb on - strand, within LU632_RS26090at 25.523 kb on + strand, within LU632_RS26090at 25.523 kb on + strand, within LU632_RS26090at 25.616 kb on + strandat 25.617 kb on - strandat 25.625 kb on - strandat 25.716 kb on + strand, within LU632_RS26095at 25.716 kb on + strand, within LU632_RS26095at 25.717 kb on - strand, within LU632_RS26095at 25.747 kb on + strand, within LU632_RS26095at 25.748 kb on - strand, within LU632_RS26095at 25.748 kb on - strand, within LU632_RS26095at 25.748 kb on - strand, within LU632_RS26095at 25.748 kb on - strand, within LU632_RS26095at 25.762 kb on + strand, within LU632_RS26095at 25.839 kb on + strand, within LU632_RS26095at 25.900 kb on + strand, within LU632_RS26095at 25.901 kb on - strand, within LU632_RS26095at 25.901 kb on - strand, within LU632_RS26095at 25.903 kb on + strand, within LU632_RS26095at 25.903 kb on + strand, within LU632_RS26095at 25.903 kb on + strand, within LU632_RS26095at 25.904 kb on - strand, within LU632_RS26095at 25.904 kb on - strand, within LU632_RS26095at 25.904 kb on - strand, within LU632_RS26095at 25.904 kb on - strand, within LU632_RS26095at 25.920 kb on - strand, within LU632_RS26095at 25.971 kb on + strand, within LU632_RS26095at 25.972 kb on - strand, within LU632_RS26095at 25.972 kb on - strand, within LU632_RS26095at 26.044 kb on + strandat 26.048 kb on + strandat 26.048 kb on + strandat 26.048 kb on + strandat 26.048 kb on + strandat 26.048 kb on + strandat 26.048 kb on + strandat 26.048 kb on + strandat 26.049 kb on - strandat 26.049 kb on - strandat 26.049 kb on - strandat 26.049 kb on - strandat 26.049 kb on - strandat 26.049 kb on - strandat 26.049 kb on - strandat 26.049 kb on - strandat 26.049 kb on - strandat 26.097 kb on - strand, within LU632_RS26100at 26.097 kb on - strand, within LU632_RS26100at 26.308 kb on - strand, within LU632_RS26100at 26.367 kb on + strandat 26.367 kb on + strandat 26.525 kb on + strandat 26.658 kb on + strandat 26.698 kb on + strandat 26.698 kb on + strandat 26.699 kb on - strandat 26.863 kb on + strandat 26.898 kb on + strandat 27.003 kb on + strandat 27.004 kb on - strandat 27.015 kb on - strandat 27.134 kb on + strand, within LU632_RS26110at 27.135 kb on - strand, within LU632_RS26110at 27.135 kb on - strand, within LU632_RS26110at 27.215 kb on + strand, within LU632_RS26110at 27.215 kb on + strand, within LU632_RS26110at 27.215 kb on + strand, within LU632_RS26110at 27.215 kb on + strand, within LU632_RS26110at 27.216 kb on - strand, within LU632_RS26110at 27.216 kb on - strand, within LU632_RS26110at 27.216 kb on - strand, within LU632_RS26110at 27.216 kb on - strand, within LU632_RS26110at 27.216 kb on - strand, within LU632_RS26110

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Per-strain Table

Position Strand Gene LocusTag Fraction Experiment:TE2, Cucumber 5 Main Stem (TE2-S-C5-MS)
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25,080 + +3.4
25,363 - LU632_RS26090 0.52 -5.2
25,508 + LU632_RS26090 0.80 -4.6
25,508 + LU632_RS26090 0.80 +0.2
25,508 + LU632_RS26090 0.80 +0.4
25,509 - LU632_RS26090 0.80 +1.9
25,509 - LU632_RS26090 0.80 +1.1
25,509 - LU632_RS26090 0.80 +0.6
25,509 - LU632_RS26090 0.80 +0.2
25,509 - LU632_RS26090 0.80 -4.1
25,523 + LU632_RS26090 0.83 -3.1
25,523 + LU632_RS26090 0.83 +0.0
25,616 + -3.1
25,617 - -0.4
25,625 - -0.7
25,716 + LU632_RS26095 0.25 -4.0
25,716 + LU632_RS26095 0.25 +1.4
25,717 - LU632_RS26095 0.25 -0.6
25,747 + LU632_RS26095 0.32 +0.4
25,748 - LU632_RS26095 0.32 -0.5
25,748 - LU632_RS26095 0.32 +1.4
25,748 - LU632_RS26095 0.32 +1.3
25,748 - LU632_RS26095 0.32 -3.7
25,762 + LU632_RS26095 0.36 -2.3
25,839 + LU632_RS26095 0.54 -0.7
25,900 + LU632_RS26095 0.68 -0.1
25,901 - LU632_RS26095 0.68 -0.3
25,901 - LU632_RS26095 0.68 -2.3
25,903 + LU632_RS26095 0.69 +0.9
25,903 + LU632_RS26095 0.69 -1.0
25,903 + LU632_RS26095 0.69 +1.5
25,904 - LU632_RS26095 0.69 -6.6
25,904 - LU632_RS26095 0.69 -2.3
25,904 - LU632_RS26095 0.69 -1.5
25,904 - LU632_RS26095 0.69 +0.3
25,920 - LU632_RS26095 0.73 -3.1
25,971 + LU632_RS26095 0.85 -2.0
25,972 - LU632_RS26095 0.85 -1.6
25,972 - LU632_RS26095 0.85 -1.8
26,044 + -2.3
26,048 + -0.4
26,048 + +4.8
26,048 + -2.9
26,048 + -2.0
26,048 + +3.3
26,048 + -2.0
26,048 + -1.9
26,049 - -3.9
26,049 - +1.0
26,049 - +1.0
26,049 - -5.3
26,049 - -3.1
26,049 - -2.8
26,049 - -2.6
26,049 - -1.8
26,049 - -2.0
26,097 - LU632_RS26100 0.18 -1.7
26,097 - LU632_RS26100 0.18 -0.9
26,308 - LU632_RS26100 0.87 -1.8
26,367 + -1.3
26,367 + -3.2
26,525 + -3.3
26,658 + -0.5
26,698 + +1.3
26,698 + -0.1
26,699 - +1.8
26,863 + +1.7
26,898 + +2.0
27,003 + -3.7
27,004 - -3.1
27,015 - -1.0
27,134 + LU632_RS26110 0.27 -3.7
27,135 - LU632_RS26110 0.27 +0.0
27,135 - LU632_RS26110 0.27 -5.5
27,215 + LU632_RS26110 0.40 +1.8
27,215 + LU632_RS26110 0.40 -3.4
27,215 + LU632_RS26110 0.40 -2.8
27,215 + LU632_RS26110 0.40 -2.3
27,216 - LU632_RS26110 0.40 -2.3
27,216 - LU632_RS26110 0.40 -2.3
27,216 - LU632_RS26110 0.40 -2.6
27,216 - LU632_RS26110 0.40 -4.0
27,216 - LU632_RS26110 0.40 -1.0

Or see this region's nucleotide sequence