Experiment: Experiment:TE2, Cucumber 5 Main Stem (TE2-S-C5-MS)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LU632_RS26050 and LU632_RS26055 are separated by 44 nucleotides LU632_RS26055 and LU632_RS26060 are separated by 1 nucleotides LU632_RS26060 and LU632_RS26065 overlap by 20 nucleotides LU632_RS26065 and LU632_RS26070 are separated by 118 nucleotides
LU632_RS26050: LU632_RS26050 - DUF1073 domain-containing protein, at 17,772 to 19,157
_RS26050
LU632_RS26055: LU632_RS26055 - DUF2442 domain-containing protein, at 19,202 to 19,450
_RS26055
LU632_RS26060: LU632_RS26060 - CCDC90 family protein, at 19,452 to 19,715
_RS26060
LU632_RS26065: LU632_RS26065 - recombinase family protein, at 19,696 to 20,274
_RS26065
LU632_RS26070: LU632_RS26070 - phage terminase large subunit, at 20,393 to 21,637
_RS26070
Position (kb) 19
20
21 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1
2
3
4
5
6 at 18.817 kb on + strand, within LU632_RS26050 at 18.833 kb on + strand, within LU632_RS26050 at 18.834 kb on - strand, within LU632_RS26050 at 18.861 kb on - strand, within LU632_RS26050 at 18.896 kb on + strand, within LU632_RS26050 at 18.923 kb on + strand, within LU632_RS26050 at 18.923 kb on + strand, within LU632_RS26050 at 18.924 kb on - strand, within LU632_RS26050 at 18.924 kb on - strand, within LU632_RS26050 at 18.994 kb on + strand, within LU632_RS26050 at 18.995 kb on - strand, within LU632_RS26050 at 18.995 kb on - strand, within LU632_RS26050 at 19.042 kb on + strand at 19.042 kb on + strand at 19.043 kb on - strand at 19.043 kb on - strand at 19.102 kb on + strand at 19.102 kb on + strand at 19.103 kb on - strand at 19.103 kb on - strand at 19.133 kb on + strand at 19.139 kb on + strand at 19.139 kb on + strand at 19.139 kb on + strand at 19.139 kb on + strand at 19.139 kb on + strand at 19.139 kb on + strand at 19.140 kb on - strand at 19.142 kb on + strand at 19.142 kb on + strand at 19.142 kb on + strand at 19.142 kb on + strand at 19.142 kb on + strand at 19.142 kb on + strand at 19.143 kb on - strand at 19.143 kb on - strand at 19.143 kb on - strand at 19.143 kb on - strand at 19.143 kb on - strand at 19.143 kb on - strand at 19.170 kb on + strand at 19.170 kb on + strand at 19.171 kb on - strand at 19.174 kb on + strand at 19.175 kb on - strand at 19.197 kb on - strand at 19.408 kb on + strand, within LU632_RS26055 at 19.408 kb on + strand, within LU632_RS26055 at 19.408 kb on + strand, within LU632_RS26055 at 19.408 kb on + strand, within LU632_RS26055 at 19.408 kb on + strand, within LU632_RS26055 at 19.408 kb on + strand, within LU632_RS26055 at 19.409 kb on - strand, within LU632_RS26055 at 19.409 kb on - strand, within LU632_RS26055 at 19.409 kb on - strand, within LU632_RS26055 at 19.409 kb on - strand, within LU632_RS26055 at 19.409 kb on - strand, within LU632_RS26055 at 19.409 kb on - strand, within LU632_RS26055 at 19.409 kb on - strand, within LU632_RS26055 at 19.409 kb on - strand, within LU632_RS26055 at 19.409 kb on - strand, within LU632_RS26055 at 19.409 kb on - strand, within LU632_RS26055 at 19.409 kb on - strand, within LU632_RS26055 at 19.409 kb on - strand, within LU632_RS26055 at 19.413 kb on + strand, within LU632_RS26055 at 19.413 kb on + strand, within LU632_RS26055 at 19.413 kb on + strand, within LU632_RS26055 at 19.413 kb on + strand, within LU632_RS26055 at 19.413 kb on + strand, within LU632_RS26055 at 19.414 kb on - strand, within LU632_RS26055 at 19.414 kb on - strand, within LU632_RS26055 at 19.414 kb on - strand, within LU632_RS26055 at 19.414 kb on - strand, within LU632_RS26055 at 19.414 kb on - strand, within LU632_RS26055 at 19.414 kb on - strand, within LU632_RS26055 at 19.414 kb on - strand, within LU632_RS26055 at 19.414 kb on - strand, within LU632_RS26055 at 19.436 kb on - strand at 19.472 kb on + strand at 19.473 kb on - strand at 19.473 kb on - strand at 19.602 kb on - strand, within LU632_RS26060 at 19.750 kb on + strand at 19.750 kb on + strand at 19.750 kb on + strand at 19.750 kb on + strand at 19.755 kb on + strand, within LU632_RS26065 at 19.755 kb on + strand, within LU632_RS26065 at 19.914 kb on + strand, within LU632_RS26065 at 20.129 kb on + strand, within LU632_RS26065 at 20.129 kb on + strand, within LU632_RS26065 at 20.215 kb on + strand, within LU632_RS26065 at 20.275 kb on + strand at 20.275 kb on + strand at 20.395 kb on - strand at 20.420 kb on - strand at 20.428 kb on + strand at 20.428 kb on + strand at 20.429 kb on - strand at 20.440 kb on + strand at 20.440 kb on + strand at 20.441 kb on - strand at 20.441 kb on - strand at 20.443 kb on + strand at 20.443 kb on + strand at 20.444 kb on - strand at 20.444 kb on - strand at 20.445 kb on + strand at 20.445 kb on + strand at 20.446 kb on - strand at 20.460 kb on + strand at 20.460 kb on + strand at 20.460 kb on + strand at 20.460 kb on + strand at 20.461 kb on - strand at 20.544 kb on + strand, within LU632_RS26070 at 20.544 kb on + strand, within LU632_RS26070 at 20.567 kb on - strand, within LU632_RS26070 at 20.572 kb on + strand, within LU632_RS26070 at 20.572 kb on + strand, within LU632_RS26070 at 20.573 kb on - strand, within LU632_RS26070 at 20.573 kb on - strand, within LU632_RS26070 at 20.619 kb on - strand, within LU632_RS26070 at 20.662 kb on + strand, within LU632_RS26070 at 20.686 kb on - strand, within LU632_RS26070 at 20.754 kb on + strand, within LU632_RS26070 at 20.755 kb on - strand, within LU632_RS26070 at 20.782 kb on + strand, within LU632_RS26070 at 20.802 kb on + strand, within LU632_RS26070 at 20.811 kb on + strand, within LU632_RS26070 at 20.812 kb on - strand, within LU632_RS26070 at 20.842 kb on + strand, within LU632_RS26070 at 20.937 kb on + strand, within LU632_RS26070 at 20.937 kb on + strand, within LU632_RS26070 at 20.937 kb on + strand, within LU632_RS26070 at 20.937 kb on + strand, within LU632_RS26070 at 20.938 kb on - strand, within LU632_RS26070 at 20.959 kb on + strand, within LU632_RS26070 at 20.960 kb on - strand, within LU632_RS26070 at 20.960 kb on - strand, within LU632_RS26070 at 20.972 kb on + strand, within LU632_RS26070 at 20.972 kb on + strand, within LU632_RS26070 at 20.976 kb on + strand, within LU632_RS26070 at 20.977 kb on - strand, within LU632_RS26070 at 21.001 kb on - strand, within LU632_RS26070 at 21.001 kb on - strand, within LU632_RS26070 at 21.079 kb on - strand, within LU632_RS26070 at 21.079 kb on - strand, within LU632_RS26070 at 21.083 kb on - strand, within LU632_RS26070 at 21.083 kb on - strand, within LU632_RS26070 at 21.116 kb on + strand, within LU632_RS26070 at 21.117 kb on - strand, within LU632_RS26070 at 21.173 kb on + strand, within LU632_RS26070 at 21.173 kb on + strand, within LU632_RS26070
Per-strain Table
Position Strand Gene LocusTag Fraction Experiment:TE2, Cucumber 5 Main Stem (TE2-S-C5-MS) remove 18,817 + LU632_RS26050 0.75 +1.4 18,833 + LU632_RS26050 0.77 +2.4 18,834 - LU632_RS26050 0.77 +1.6 18,861 - LU632_RS26050 0.79 -0.8 18,896 + LU632_RS26050 0.81 -1.0 18,923 + LU632_RS26050 0.83 -2.8 18,923 + LU632_RS26050 0.83 +1.0 18,924 - LU632_RS26050 0.83 -3.6 18,924 - LU632_RS26050 0.83 -1.2 18,994 + LU632_RS26050 0.88 -2.8 18,995 - LU632_RS26050 0.88 -0.9 18,995 - LU632_RS26050 0.88 +2.0 19,042 + -0.6 19,042 + +1.1 19,043 - -2.0 19,043 - +0.2 19,102 + +1.9 19,102 + +0.2 19,103 - -1.7 19,103 - -0.2 19,133 + +4.1 19,139 + +0.2 19,139 + +2.7 19,139 + -1.3 19,139 + -1.4 19,139 + -3.9 19,139 + +3.5 19,140 - +1.9 19,142 + -4.6 19,142 + -0.9 19,142 + +1.3 19,142 + +1.0 19,142 + -0.5 19,142 + -2.8 19,143 - -1.0 19,143 - -3.0 19,143 - -2.6 19,143 - +0.3 19,143 - -1.0 19,143 - -0.7 19,170 + -3.9 19,170 + -0.4 19,171 - -3.0 19,174 + -2.6 19,175 - -4.8 19,197 - -3.4 19,408 + LU632_RS26055 0.83 +2.0 19,408 + LU632_RS26055 0.83 -3.1 19,408 + LU632_RS26055 0.83 -2.3 19,408 + LU632_RS26055 0.83 -0.8 19,408 + LU632_RS26055 0.83 -4.0 19,408 + LU632_RS26055 0.83 +1.8 19,409 - LU632_RS26055 0.83 -2.6 19,409 - LU632_RS26055 0.83 +0.8 19,409 - LU632_RS26055 0.83 -1.4 19,409 - LU632_RS26055 0.83 -0.4 19,409 - LU632_RS26055 0.83 +1.5 19,409 - LU632_RS26055 0.83 +1.0 19,409 - LU632_RS26055 0.83 -3.9 19,409 - LU632_RS26055 0.83 +0.1 19,409 - LU632_RS26055 0.83 -4.3 19,409 - LU632_RS26055 0.83 -3.7 19,409 - LU632_RS26055 0.83 +2.9 19,409 - LU632_RS26055 0.83 -1.0 19,413 + LU632_RS26055 0.85 -4.9 19,413 + LU632_RS26055 0.85 -4.1 19,413 + LU632_RS26055 0.85 +1.1 19,413 + LU632_RS26055 0.85 -2.8 19,413 + LU632_RS26055 0.85 -3.3 19,414 - LU632_RS26055 0.85 +1.9 19,414 - LU632_RS26055 0.85 -1.6 19,414 - LU632_RS26055 0.85 -2.0 19,414 - LU632_RS26055 0.85 +1.4 19,414 - LU632_RS26055 0.85 -0.9 19,414 - LU632_RS26055 0.85 -0.3 19,414 - LU632_RS26055 0.85 -3.8 19,414 - LU632_RS26055 0.85 +0.0 19,436 - -2.4 19,472 + -4.3 19,473 - +0.2 19,473 - +0.0 19,602 - LU632_RS26060 0.57 -3.1 19,750 + -1.7 19,750 + -3.1 19,750 + -1.0 19,750 + -2.8 19,755 + LU632_RS26065 0.10 -4.9 19,755 + LU632_RS26065 0.10 -2.8 19,914 + LU632_RS26065 0.38 -2.0 20,129 + LU632_RS26065 0.75 -4.2 20,129 + LU632_RS26065 0.75 +1.6 20,215 + LU632_RS26065 0.90 -2.7 20,275 + -5.3 20,275 + +3.5 20,395 - +1.3 20,420 - +1.5 20,428 + +1.9 20,428 + -2.0 20,429 - -0.8 20,440 + -0.2 20,440 + +1.6 20,441 - -1.0 20,441 - -0.2 20,443 + +1.1 20,443 + +0.5 20,444 - -2.0 20,444 - +3.0 20,445 + -1.3 20,445 + -1.0 20,446 - +0.7 20,460 + +1.4 20,460 + -2.1 20,460 + -1.6 20,460 + +0.1 20,461 - +2.5 20,544 + LU632_RS26070 0.12 -0.5 20,544 + LU632_RS26070 0.12 +1.7 20,567 - LU632_RS26070 0.14 -2.0 20,572 + LU632_RS26070 0.14 +0.0 20,572 + LU632_RS26070 0.14 +0.7 20,573 - LU632_RS26070 0.14 -3.0 20,573 - LU632_RS26070 0.14 -0.3 20,619 - LU632_RS26070 0.18 -2.3 20,662 + LU632_RS26070 0.22 -2.3 20,686 - LU632_RS26070 0.24 +1.5 20,754 + LU632_RS26070 0.29 -2.3 20,755 - LU632_RS26070 0.29 -3.1 20,782 + LU632_RS26070 0.31 -2.3 20,802 + LU632_RS26070 0.33 -1.0 20,811 + LU632_RS26070 0.34 -3.4 20,812 - LU632_RS26070 0.34 -2.0 20,842 + LU632_RS26070 0.36 -3.3 20,937 + LU632_RS26070 0.44 -3.1 20,937 + LU632_RS26070 0.44 -2.0 20,937 + LU632_RS26070 0.44 -0.8 20,937 + LU632_RS26070 0.44 -1.3 20,938 - LU632_RS26070 0.44 -2.2 20,959 + LU632_RS26070 0.45 -1.0 20,960 - LU632_RS26070 0.46 -3.6 20,960 - LU632_RS26070 0.46 +6.5 20,972 + LU632_RS26070 0.47 -3.3 20,972 + LU632_RS26070 0.47 -1.3 20,976 + LU632_RS26070 0.47 +0.0 20,977 - LU632_RS26070 0.47 +2.8 21,001 - LU632_RS26070 0.49 -0.4 21,001 - LU632_RS26070 0.49 +2.1 21,079 - LU632_RS26070 0.55 -2.3 21,079 - LU632_RS26070 0.55 +1.0 21,083 - LU632_RS26070 0.55 +1.4 21,083 - LU632_RS26070 0.55 -2.0 21,116 + LU632_RS26070 0.58 -1.7 21,117 - LU632_RS26070 0.58 -3.6 21,173 + LU632_RS26070 0.63 -2.3 21,173 + LU632_RS26070 0.63 -1.6
Or see this region's nucleotide sequence