Experiment: Experiment:TE2, Cucumber 5 Main Stem (TE2-S-C5-MS)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LU632_RS26005 and LU632_RS26010 are separated by 2 nucleotides LU632_RS26010 and LU632_RS26015 overlap by 1 nucleotides LU632_RS26015 and LU632_RS26020 overlap by 4 nucleotides LU632_RS26020 and LU632_RS26025 are separated by 9 nucleotides LU632_RS26025 and LU632_RS26030 are separated by 47 nucleotides
LU632_RS26005: LU632_RS26005 - hypothetical protein, at 11,851 to 12,402
_RS26005
LU632_RS26010: LU632_RS26010 - head-tail adaptor, at 12,405 to 12,776
_RS26010
LU632_RS26015: LU632_RS26015 - hypothetical protein, at 12,776 to 13,306
_RS26015
LU632_RS26020: LU632_RS26020 - DUF4054 domain-containing protein, at 13,303 to 13,686
_RS26020
LU632_RS26025: LU632_RS26025 - hypothetical protein, at 13,696 to 14,256
_RS26025
LU632_RS26030: LU632_RS26030 - DUF2184 domain-containing protein, at 14,304 to 15,260
_RS26030
Position (kb) 13
14 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 12.377 kb on + strand at 12.377 kb on + strand at 12.434 kb on - strand at 12.434 kb on - strand at 12.461 kb on + strand, within LU632_RS26010 at 12.461 kb on + strand, within LU632_RS26010 at 12.461 kb on + strand, within LU632_RS26010 at 12.462 kb on - strand, within LU632_RS26010 at 12.462 kb on - strand, within LU632_RS26010 at 12.466 kb on + strand, within LU632_RS26010 at 12.466 kb on + strand, within LU632_RS26010 at 12.467 kb on - strand, within LU632_RS26010 at 12.488 kb on + strand, within LU632_RS26010 at 12.488 kb on + strand, within LU632_RS26010 at 12.489 kb on - strand, within LU632_RS26010 at 12.490 kb on + strand, within LU632_RS26010 at 12.516 kb on - strand, within LU632_RS26010 at 12.533 kb on + strand, within LU632_RS26010 at 12.533 kb on + strand, within LU632_RS26010 at 12.534 kb on - strand, within LU632_RS26010 at 12.651 kb on + strand, within LU632_RS26010 at 12.665 kb on + strand, within LU632_RS26010 at 12.665 kb on + strand, within LU632_RS26010 at 12.665 kb on + strand, within LU632_RS26010 at 12.665 kb on + strand, within LU632_RS26010 at 12.665 kb on + strand, within LU632_RS26010 at 12.666 kb on - strand, within LU632_RS26010 at 12.666 kb on - strand, within LU632_RS26010 at 12.666 kb on - strand, within LU632_RS26010 at 12.666 kb on - strand, within LU632_RS26010 at 12.666 kb on - strand, within LU632_RS26010 at 12.666 kb on - strand, within LU632_RS26010 at 12.666 kb on - strand, within LU632_RS26010 at 12.708 kb on + strand, within LU632_RS26010 at 12.708 kb on + strand, within LU632_RS26010 at 12.712 kb on - strand, within LU632_RS26010 at 12.795 kb on + strand at 12.795 kb on + strand at 12.796 kb on - strand at 12.796 kb on - strand at 12.796 kb on - strand at 12.796 kb on - strand at 12.796 kb on - strand at 12.796 kb on - strand at 12.796 kb on - strand at 12.796 kb on - strand at 12.796 kb on - strand at 12.813 kb on + strand at 13.043 kb on + strand, within LU632_RS26015 at 13.043 kb on + strand, within LU632_RS26015 at 13.162 kb on + strand, within LU632_RS26015 at 13.162 kb on + strand, within LU632_RS26015 at 13.162 kb on + strand, within LU632_RS26015 at 13.162 kb on + strand, within LU632_RS26015 at 13.163 kb on - strand, within LU632_RS26015 at 13.163 kb on - strand, within LU632_RS26015 at 13.164 kb on + strand, within LU632_RS26015 at 13.165 kb on - strand, within LU632_RS26015 at 13.165 kb on - strand, within LU632_RS26015 at 13.165 kb on - strand, within LU632_RS26015 at 13.233 kb on - strand, within LU632_RS26015 at 13.511 kb on + strand, within LU632_RS26020 at 14.296 kb on - strand at 14.309 kb on + strand at 14.309 kb on + strand at 14.310 kb on - strand at 14.320 kb on + strand at 14.320 kb on + strand at 14.320 kb on + strand at 14.320 kb on + strand at 14.321 kb on - strand at 14.371 kb on + strand at 14.371 kb on + strand at 14.371 kb on + strand at 14.372 kb on - strand at 14.372 kb on - strand at 14.379 kb on + strand at 14.380 kb on - strand at 14.412 kb on - strand, within LU632_RS26030 at 14.456 kb on + strand, within LU632_RS26030 at 14.459 kb on + strand, within LU632_RS26030 at 14.460 kb on - strand, within LU632_RS26030 at 14.460 kb on - strand, within LU632_RS26030 at 14.461 kb on + strand, within LU632_RS26030 at 14.502 kb on - strand, within LU632_RS26030 at 14.510 kb on + strand, within LU632_RS26030 at 14.510 kb on + strand, within LU632_RS26030 at 14.561 kb on + strand, within LU632_RS26030 at 14.672 kb on - strand, within LU632_RS26030
Per-strain Table
Position Strand Gene LocusTag Fraction Experiment:TE2, Cucumber 5 Main Stem (TE2-S-C5-MS) remove 12,377 + -2.8 12,377 + -3.4 12,434 - -1.6 12,434 - +2.8 12,461 + LU632_RS26010 0.15 -1.7 12,461 + LU632_RS26010 0.15 -3.0 12,461 + LU632_RS26010 0.15 +2.3 12,462 - LU632_RS26010 0.15 -2.3 12,462 - LU632_RS26010 0.15 -3.1 12,466 + LU632_RS26010 0.16 +0.0 12,466 + LU632_RS26010 0.16 -0.9 12,467 - LU632_RS26010 0.17 -3.7 12,488 + LU632_RS26010 0.22 -0.3 12,488 + LU632_RS26010 0.22 -3.4 12,489 - LU632_RS26010 0.23 +1.1 12,490 + LU632_RS26010 0.23 -4.1 12,516 - LU632_RS26010 0.30 +1.6 12,533 + LU632_RS26010 0.34 -4.3 12,533 + LU632_RS26010 0.34 +0.0 12,534 - LU632_RS26010 0.35 -0.6 12,651 + LU632_RS26010 0.66 -1.5 12,665 + LU632_RS26010 0.70 -1.0 12,665 + LU632_RS26010 0.70 +0.0 12,665 + LU632_RS26010 0.70 -2.3 12,665 + LU632_RS26010 0.70 -4.2 12,665 + LU632_RS26010 0.70 +0.0 12,666 - LU632_RS26010 0.70 +2.1 12,666 - LU632_RS26010 0.70 -2.8 12,666 - LU632_RS26010 0.70 -3.3 12,666 - LU632_RS26010 0.70 +0.6 12,666 - LU632_RS26010 0.70 -3.9 12,666 - LU632_RS26010 0.70 -2.0 12,666 - LU632_RS26010 0.70 -2.1 12,708 + LU632_RS26010 0.81 +2.9 12,708 + LU632_RS26010 0.81 -3.4 12,712 - LU632_RS26010 0.83 -1.0 12,795 + -1.1 12,795 + -3.7 12,796 - -3.1 12,796 - -1.9 12,796 - +0.4 12,796 - +0.3 12,796 - +0.8 12,796 - +2.0 12,796 - +1.3 12,796 - +0.0 12,796 - -0.1 12,813 + -0.6 13,043 + LU632_RS26015 0.50 -0.6 13,043 + LU632_RS26015 0.50 -3.4 13,162 + LU632_RS26015 0.73 -2.6 13,162 + LU632_RS26015 0.73 -1.0 13,162 + LU632_RS26015 0.73 -1.0 13,162 + LU632_RS26015 0.73 -1.6 13,163 - LU632_RS26015 0.73 -3.8 13,163 - LU632_RS26015 0.73 +0.5 13,164 + LU632_RS26015 0.73 -2.0 13,165 - LU632_RS26015 0.73 -1.6 13,165 - LU632_RS26015 0.73 -0.4 13,165 - LU632_RS26015 0.73 -1.0 13,233 - LU632_RS26015 0.86 -3.6 13,511 + LU632_RS26020 0.54 -3.1 14,296 - -0.4 14,309 + -0.2 14,309 + +0.9 14,310 - -1.2 14,320 + +0.5 14,320 + +0.9 14,320 + +0.0 14,320 + +1.3 14,321 - -2.8 14,371 + +1.1 14,371 + +0.4 14,371 + -0.1 14,372 - -1.8 14,372 - -2.8 14,379 + +1.9 14,380 - -4.0 14,412 - LU632_RS26030 0.11 -0.7 14,456 + LU632_RS26030 0.16 -3.0 14,459 + LU632_RS26030 0.16 -3.0 14,460 - LU632_RS26030 0.16 -3.0 14,460 - LU632_RS26030 0.16 +1.2 14,461 + LU632_RS26030 0.16 -3.7 14,502 - LU632_RS26030 0.21 -1.6 14,510 + LU632_RS26030 0.22 +0.7 14,510 + LU632_RS26030 0.22 -0.4 14,561 + LU632_RS26030 0.27 -0.2 14,672 - LU632_RS26030 0.38 -0.5
Or see this region's nucleotide sequence