Experiment: Experiment:TE2, Cucumber 5 Main Stem (TE2-S-C5-MS)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LU632_RS25660 and LU632_RS25665 are separated by 69 nucleotides LU632_RS25665 and LU632_RS25670 are separated by 44 nucleotides LU632_RS25670 and LU632_RS25675 are separated by 5 nucleotides
LU632_RS25660: LU632_RS25660 - prepilin, at 62,401 to 62,994
_RS25660
LU632_RS25665: LU632_RS25665 - lytic transglycosylase domain-containing protein, at 63,064 to 63,540
_RS25665
LU632_RS25670: LU632_RS25670 - prepilin peptidase, at 63,585 to 64,202
_RS25670
LU632_RS25675: LU632_RS25675 - shufflon system plasmid conjugative transfer pilus tip adhesin PilV, at 64,208 to 65,599
_RS25675
Position (kb) 63
64
65 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4
5 at 62.601 kb on - strand, within LU632_RS25660 at 62.657 kb on + strand, within LU632_RS25660 at 62.658 kb on - strand, within LU632_RS25660 at 62.731 kb on - strand, within LU632_RS25660 at 62.781 kb on + strand, within LU632_RS25660 at 62.781 kb on + strand, within LU632_RS25660 at 62.781 kb on + strand, within LU632_RS25660 at 62.803 kb on + strand, within LU632_RS25660 at 62.804 kb on - strand, within LU632_RS25660 at 62.993 kb on - strand at 63.037 kb on + strand at 63.038 kb on - strand at 63.038 kb on - strand at 63.038 kb on - strand at 63.064 kb on - strand at 63.084 kb on + strand at 63.085 kb on - strand at 63.128 kb on + strand, within LU632_RS25665 at 63.128 kb on + strand, within LU632_RS25665 at 63.198 kb on - strand, within LU632_RS25665 at 63.212 kb on + strand, within LU632_RS25665 at 63.225 kb on + strand, within LU632_RS25665 at 63.231 kb on + strand, within LU632_RS25665 at 63.232 kb on - strand, within LU632_RS25665 at 63.232 kb on - strand, within LU632_RS25665 at 63.232 kb on - strand, within LU632_RS25665 at 63.232 kb on - strand, within LU632_RS25665 at 63.234 kb on + strand, within LU632_RS25665 at 63.252 kb on + strand, within LU632_RS25665 at 63.253 kb on - strand, within LU632_RS25665 at 63.347 kb on + strand, within LU632_RS25665 at 63.347 kb on + strand, within LU632_RS25665 at 63.348 kb on - strand, within LU632_RS25665 at 63.366 kb on + strand, within LU632_RS25665 at 63.367 kb on - strand, within LU632_RS25665 at 63.442 kb on + strand, within LU632_RS25665 at 63.442 kb on + strand, within LU632_RS25665 at 63.442 kb on + strand, within LU632_RS25665 at 63.442 kb on + strand, within LU632_RS25665 at 63.442 kb on + strand, within LU632_RS25665 at 63.442 kb on + strand, within LU632_RS25665 at 63.442 kb on + strand, within LU632_RS25665 at 63.442 kb on + strand, within LU632_RS25665 at 63.442 kb on + strand, within LU632_RS25665 at 63.443 kb on - strand, within LU632_RS25665 at 63.443 kb on - strand, within LU632_RS25665 at 63.443 kb on - strand, within LU632_RS25665 at 63.443 kb on - strand, within LU632_RS25665 at 63.443 kb on - strand, within LU632_RS25665 at 63.443 kb on - strand, within LU632_RS25665 at 63.444 kb on + strand, within LU632_RS25665 at 63.445 kb on - strand, within LU632_RS25665 at 63.445 kb on - strand, within LU632_RS25665 at 63.502 kb on + strand at 63.502 kb on + strand at 63.503 kb on - strand at 63.511 kb on + strand at 63.512 kb on - strand at 63.521 kb on + strand at 63.562 kb on + strand at 63.563 kb on - strand at 63.575 kb on - strand at 63.599 kb on + strand at 63.599 kb on + strand at 63.599 kb on + strand at 63.599 kb on + strand at 63.600 kb on - strand at 63.600 kb on - strand at 63.600 kb on - strand at 63.601 kb on + strand at 63.661 kb on + strand, within LU632_RS25670 at 63.661 kb on + strand, within LU632_RS25670 at 63.662 kb on - strand, within LU632_RS25670 at 63.662 kb on - strand, within LU632_RS25670 at 63.699 kb on - strand, within LU632_RS25670 at 63.748 kb on + strand, within LU632_RS25670 at 63.925 kb on - strand, within LU632_RS25670 at 63.925 kb on - strand, within LU632_RS25670 at 63.925 kb on - strand, within LU632_RS25670 at 63.996 kb on + strand, within LU632_RS25670 at 63.996 kb on + strand, within LU632_RS25670 at 63.996 kb on + strand, within LU632_RS25670 at 63.997 kb on - strand, within LU632_RS25670 at 63.997 kb on - strand, within LU632_RS25670 at 63.997 kb on - strand, within LU632_RS25670 at 63.997 kb on - strand, within LU632_RS25670 at 64.000 kb on + strand, within LU632_RS25670 at 64.000 kb on + strand, within LU632_RS25670 at 64.000 kb on + strand, within LU632_RS25670 at 64.073 kb on + strand, within LU632_RS25670 at 64.073 kb on + strand, within LU632_RS25670 at 64.074 kb on - strand, within LU632_RS25670 at 64.074 kb on - strand, within LU632_RS25670 at 64.094 kb on + strand, within LU632_RS25670 at 64.194 kb on - strand at 64.200 kb on + strand at 64.201 kb on - strand at 64.201 kb on - strand at 64.261 kb on - strand at 64.296 kb on + strand at 64.296 kb on + strand at 64.296 kb on + strand at 64.296 kb on + strand at 64.296 kb on + strand at 64.296 kb on + strand at 64.296 kb on + strand at 64.296 kb on + strand at 64.296 kb on + strand at 64.296 kb on + strand at 64.296 kb on + strand at 64.297 kb on - strand at 64.297 kb on - strand at 64.297 kb on - strand at 64.298 kb on + strand at 64.298 kb on + strand at 64.298 kb on + strand at 64.298 kb on + strand at 64.298 kb on + strand at 64.298 kb on + strand at 64.298 kb on + strand at 64.298 kb on + strand at 64.298 kb on + strand at 64.298 kb on + strand at 64.299 kb on - strand at 64.299 kb on - strand at 64.299 kb on - strand at 64.299 kb on - strand at 64.299 kb on - strand at 64.299 kb on - strand at 64.299 kb on - strand at 64.299 kb on - strand at 64.313 kb on + strand at 64.314 kb on - strand at 64.316 kb on - strand at 64.322 kb on + strand at 64.322 kb on + strand at 64.322 kb on + strand at 64.322 kb on + strand at 64.322 kb on + strand at 64.322 kb on + strand at 64.322 kb on + strand at 64.322 kb on + strand at 64.322 kb on + strand at 64.323 kb on - strand at 64.323 kb on - strand at 64.323 kb on - strand at 64.391 kb on + strand, within LU632_RS25675 at 64.391 kb on + strand, within LU632_RS25675 at 64.508 kb on - strand, within LU632_RS25675 at 64.510 kb on + strand, within LU632_RS25675 at 64.552 kb on + strand, within LU632_RS25675 at 64.552 kb on + strand, within LU632_RS25675 at 64.553 kb on - strand, within LU632_RS25675 at 64.605 kb on + strand, within LU632_RS25675 at 64.606 kb on - strand, within LU632_RS25675 at 64.611 kb on - strand, within LU632_RS25675 at 64.611 kb on - strand, within LU632_RS25675 at 64.611 kb on - strand, within LU632_RS25675 at 64.641 kb on + strand, within LU632_RS25675 at 64.722 kb on - strand, within LU632_RS25675 at 64.973 kb on - strand, within LU632_RS25675 at 65.024 kb on + strand, within LU632_RS25675 at 65.024 kb on + strand, within LU632_RS25675 at 65.025 kb on - strand, within LU632_RS25675 at 65.025 kb on - strand, within LU632_RS25675 at 65.027 kb on - strand, within LU632_RS25675 at 65.027 kb on - strand, within LU632_RS25675 at 65.154 kb on + strand, within LU632_RS25675 at 65.155 kb on - strand, within LU632_RS25675 at 65.155 kb on - strand, within LU632_RS25675
Per-strain Table
Position Strand Gene LocusTag Fraction Experiment:TE2, Cucumber 5 Main Stem (TE2-S-C5-MS) remove 62,601 - LU632_RS25660 0.34 -0.2 62,657 + LU632_RS25660 0.43 -1.0 62,658 - LU632_RS25660 0.43 -1.5 62,731 - LU632_RS25660 0.56 -0.3 62,781 + LU632_RS25660 0.64 +3.1 62,781 + LU632_RS25660 0.64 -3.2 62,781 + LU632_RS25660 0.64 +0.7 62,803 + LU632_RS25660 0.68 -1.0 62,804 - LU632_RS25660 0.68 -1.4 62,993 - +0.5 63,037 + -1.0 63,038 - +1.3 63,038 - -2.3 63,038 - -2.6 63,064 - +0.1 63,084 + -1.4 63,085 - +2.4 63,128 + LU632_RS25665 0.13 -1.6 63,128 + LU632_RS25665 0.13 +1.4 63,198 - LU632_RS25665 0.28 -2.2 63,212 + LU632_RS25665 0.31 +0.0 63,225 + LU632_RS25665 0.34 +0.6 63,231 + LU632_RS25665 0.35 -1.0 63,232 - LU632_RS25665 0.35 -0.5 63,232 - LU632_RS25665 0.35 +0.6 63,232 - LU632_RS25665 0.35 -1.3 63,232 - LU632_RS25665 0.35 +1.1 63,234 + LU632_RS25665 0.36 +0.4 63,252 + LU632_RS25665 0.39 +1.9 63,253 - LU632_RS25665 0.40 -2.8 63,347 + LU632_RS25665 0.59 -2.0 63,347 + LU632_RS25665 0.59 -2.6 63,348 - LU632_RS25665 0.60 +0.7 63,366 + LU632_RS25665 0.63 -0.2 63,367 - LU632_RS25665 0.64 -1.6 63,442 + LU632_RS25665 0.79 -0.7 63,442 + LU632_RS25665 0.79 -2.8 63,442 + LU632_RS25665 0.79 +1.9 63,442 + LU632_RS25665 0.79 -0.2 63,442 + LU632_RS25665 0.79 -0.1 63,442 + LU632_RS25665 0.79 -3.8 63,442 + LU632_RS25665 0.79 +0.0 63,442 + LU632_RS25665 0.79 +1.3 63,442 + LU632_RS25665 0.79 -3.0 63,443 - LU632_RS25665 0.79 -1.2 63,443 - LU632_RS25665 0.79 +2.3 63,443 - LU632_RS25665 0.79 +1.6 63,443 - LU632_RS25665 0.79 +0.6 63,443 - LU632_RS25665 0.79 +0.3 63,443 - LU632_RS25665 0.79 -1.2 63,444 + LU632_RS25665 0.80 +0.0 63,445 - LU632_RS25665 0.80 +0.6 63,445 - LU632_RS25665 0.80 +1.0 63,502 + -1.7 63,502 + -0.4 63,503 - -1.9 63,511 + +0.2 63,512 - +0.5 63,521 + +0.3 63,562 + -0.6 63,563 - -4.0 63,575 - +1.9 63,599 + -2.6 63,599 + +1.1 63,599 + +4.8 63,599 + +0.0 63,600 - -1.4 63,600 - -0.1 63,600 - -3.2 63,601 + +0.1 63,661 + LU632_RS25670 0.12 +0.7 63,661 + LU632_RS25670 0.12 +0.4 63,662 - LU632_RS25670 0.12 -0.2 63,662 - LU632_RS25670 0.12 +1.4 63,699 - LU632_RS25670 0.18 +0.4 63,748 + LU632_RS25670 0.26 -4.0 63,925 - LU632_RS25670 0.55 -4.2 63,925 - LU632_RS25670 0.55 +0.8 63,925 - LU632_RS25670 0.55 -4.2 63,996 + LU632_RS25670 0.67 +0.5 63,996 + LU632_RS25670 0.67 +0.5 63,996 + LU632_RS25670 0.67 -1.6 63,997 - LU632_RS25670 0.67 -2.8 63,997 - LU632_RS25670 0.67 +0.7 63,997 - LU632_RS25670 0.67 -3.2 63,997 - LU632_RS25670 0.67 +1.0 64,000 + LU632_RS25670 0.67 -2.4 64,000 + LU632_RS25670 0.67 -2.8 64,000 + LU632_RS25670 0.67 -2.2 64,073 + LU632_RS25670 0.79 -0.2 64,073 + LU632_RS25670 0.79 +0.8 64,074 - LU632_RS25670 0.79 +0.1 64,074 - LU632_RS25670 0.79 -0.1 64,094 + LU632_RS25670 0.82 +1.6 64,194 - +1.0 64,200 + -4.0 64,201 - +1.4 64,201 - -1.1 64,261 - -1.1 64,296 + -1.8 64,296 + +0.5 64,296 + +0.4 64,296 + +3.1 64,296 + +0.8 64,296 + -3.0 64,296 + +0.8 64,296 + -1.5 64,296 + -0.6 64,296 + +1.6 64,296 + -1.0 64,297 - -0.2 64,297 - -0.8 64,297 - -0.1 64,298 + -1.0 64,298 + +1.4 64,298 + +0.3 64,298 + -1.9 64,298 + -3.3 64,298 + -1.6 64,298 + -2.0 64,298 + +0.8 64,298 + -2.9 64,298 + -2.0 64,299 - +0.8 64,299 - -0.4 64,299 - -0.4 64,299 - +0.3 64,299 - +0.3 64,299 - -1.0 64,299 - -1.6 64,299 - -0.8 64,313 + +0.6 64,314 - +0.0 64,316 - -3.5 64,322 + +1.6 64,322 + -1.6 64,322 + -2.0 64,322 + +0.4 64,322 + +2.7 64,322 + -0.2 64,322 + +0.3 64,322 + +3.1 64,322 + +4.6 64,323 - -0.7 64,323 - -1.5 64,323 - -0.7 64,391 + LU632_RS25675 0.13 +1.0 64,391 + LU632_RS25675 0.13 -1.6 64,508 - LU632_RS25675 0.22 -3.0 64,510 + LU632_RS25675 0.22 -2.6 64,552 + LU632_RS25675 0.25 +1.6 64,552 + LU632_RS25675 0.25 -3.6 64,553 - LU632_RS25675 0.25 -2.2 64,605 + LU632_RS25675 0.29 -1.2 64,606 - LU632_RS25675 0.29 -0.7 64,611 - LU632_RS25675 0.29 +1.9 64,611 - LU632_RS25675 0.29 +0.9 64,611 - LU632_RS25675 0.29 +0.4 64,641 + LU632_RS25675 0.31 +0.4 64,722 - LU632_RS25675 0.37 -1.0 64,973 - LU632_RS25675 0.55 -0.3 65,024 + LU632_RS25675 0.59 -1.0 65,024 + LU632_RS25675 0.59 +0.3 65,025 - LU632_RS25675 0.59 -2.9 65,025 - LU632_RS25675 0.59 -2.6 65,027 - LU632_RS25675 0.59 +1.6 65,027 - LU632_RS25675 0.59 +2.6 65,154 + LU632_RS25675 0.68 -0.7 65,155 - LU632_RS25675 0.68 +0.7 65,155 - LU632_RS25675 0.68 +1.4
Or see this region's nucleotide sequence