Experiment: Experiment:TE2, Cucumber 5 Main Stem (TE2-S-C5-MS)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LU632_RS25445 and LU632_RS25450 are separated by 1 nucleotides LU632_RS25450 and LU632_RS25455 are separated by 278 nucleotides LU632_RS25455 and LU632_RS25460 are separated by 173 nucleotides
LU632_RS25445: LU632_RS25445 - relaxase/mobilization nuclease domain-containing protein, at 24,220 to 26,151
_RS25445
LU632_RS25450: LU632_RS25450 - mobilization protein, at 26,153 to 26,497
_RS25450
LU632_RS25455: LU632_RS25455 - molybdopterin-guanine dinucleotide biosynthesis protein MobC, at 26,776 to 27,087
_RS25455
LU632_RS25460: LU632_RS25460 - DUF945 domain-containing protein, at 27,261 to 28,094
_RS25460
Position (kb) 26
27 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1
2
3
4 at 25.188 kb on + strand, within LU632_RS25445 at 25.361 kb on + strand, within LU632_RS25445 at 25.362 kb on - strand, within LU632_RS25445 at 25.362 kb on - strand, within LU632_RS25445 at 25.362 kb on - strand, within LU632_RS25445 at 25.373 kb on - strand, within LU632_RS25445 at 25.480 kb on - strand, within LU632_RS25445 at 25.558 kb on + strand, within LU632_RS25445 at 25.604 kb on + strand, within LU632_RS25445 at 25.605 kb on - strand, within LU632_RS25445 at 25.605 kb on - strand, within LU632_RS25445 at 25.623 kb on - strand, within LU632_RS25445 at 25.697 kb on + strand, within LU632_RS25445 at 25.697 kb on + strand, within LU632_RS25445 at 25.697 kb on + strand, within LU632_RS25445 at 25.697 kb on + strand, within LU632_RS25445 at 25.698 kb on - strand, within LU632_RS25445 at 25.698 kb on - strand, within LU632_RS25445 at 25.726 kb on - strand, within LU632_RS25445 at 25.802 kb on + strand, within LU632_RS25445 at 26.087 kb on + strand at 26.115 kb on + strand at 26.195 kb on + strand, within LU632_RS25450 at 26.221 kb on + strand, within LU632_RS25450 at 26.221 kb on + strand, within LU632_RS25450 at 26.281 kb on - strand, within LU632_RS25450 at 26.395 kb on + strand, within LU632_RS25450 at 26.492 kb on - strand at 26.535 kb on + strand at 26.536 kb on - strand at 26.653 kb on + strand at 26.656 kb on - strand at 26.714 kb on - strand at 26.730 kb on - strand at 26.796 kb on + strand at 26.797 kb on - strand at 26.820 kb on + strand, within LU632_RS25455 at 26.868 kb on + strand, within LU632_RS25455 at 26.869 kb on - strand, within LU632_RS25455 at 27.085 kb on + strand at 27.312 kb on + strand at 27.421 kb on + strand, within LU632_RS25460 at 27.421 kb on + strand, within LU632_RS25460 at 27.442 kb on + strand, within LU632_RS25460 at 27.443 kb on - strand, within LU632_RS25460 at 27.447 kb on - strand, within LU632_RS25460
Per-strain Table
Position Strand Gene LocusTag Fraction Experiment:TE2, Cucumber 5 Main Stem (TE2-S-C5-MS) remove 25,188 + LU632_RS25445 0.50 -2.0 25,361 + LU632_RS25445 0.59 +0.4 25,362 - LU632_RS25445 0.59 -3.0 25,362 - LU632_RS25445 0.59 -0.8 25,362 - LU632_RS25445 0.59 +0.9 25,373 - LU632_RS25445 0.60 +0.2 25,480 - LU632_RS25445 0.65 +1.6 25,558 + LU632_RS25445 0.69 +1.4 25,604 + LU632_RS25445 0.72 -4.1 25,605 - LU632_RS25445 0.72 +1.9 25,605 - LU632_RS25445 0.72 +0.9 25,623 - LU632_RS25445 0.73 +0.6 25,697 + LU632_RS25445 0.76 +0.2 25,697 + LU632_RS25445 0.76 +1.8 25,697 + LU632_RS25445 0.76 +2.0 25,697 + LU632_RS25445 0.76 -1.6 25,698 - LU632_RS25445 0.77 +3.4 25,698 - LU632_RS25445 0.77 -0.1 25,726 - LU632_RS25445 0.78 +1.4 25,802 + LU632_RS25445 0.82 -1.0 26,087 + +3.9 26,115 + -2.3 26,195 + LU632_RS25450 0.12 -0.2 26,221 + LU632_RS25450 0.20 +2.0 26,221 + LU632_RS25450 0.20 -3.9 26,281 - LU632_RS25450 0.37 +0.5 26,395 + LU632_RS25450 0.70 -3.0 26,492 - -0.4 26,535 + -5.0 26,536 - -0.1 26,653 + +2.1 26,656 - -1.2 26,714 - -1.0 26,730 - -0.2 26,796 + +0.7 26,797 - +0.3 26,820 + LU632_RS25455 0.14 -1.1 26,868 + LU632_RS25455 0.29 -2.5 26,869 - LU632_RS25455 0.30 -3.1 27,085 + -3.5 27,312 + +0.8 27,421 + LU632_RS25460 0.19 -3.1 27,421 + LU632_RS25460 0.19 -3.2 27,442 + LU632_RS25460 0.22 +1.9 27,443 - LU632_RS25460 0.22 -2.5 27,447 - LU632_RS25460 0.22 +2.7
Or see this region's nucleotide sequence