Experiment: Experiment:TE2, Cucumber 5 Main Stem (TE2-S-C5-MS)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LU632_RS25380 and LU632_RS25385 are separated by 23 nucleotides LU632_RS25385 and traW are separated by 14 nucleotides
LU632_RS25380: LU632_RS25380 - hypothetical protein, at 8,856 to 9,809
_RS25380
LU632_RS25385: LU632_RS25385 - ATP-binding protein, at 9,833 to 12,910
_RS25385
LU632_RS25390: traW - conjugal transfer protein TraW, at 12,925 to 14,121
traW
Position (kb) 9
10
11
12
13 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4 at 8.842 kb on + strand at 8.930 kb on + strand at 8.972 kb on + strand, within LU632_RS25380 at 9.042 kb on + strand, within LU632_RS25380 at 9.213 kb on - strand, within LU632_RS25380 at 9.338 kb on + strand, within LU632_RS25380 at 9.404 kb on + strand, within LU632_RS25380 at 9.409 kb on + strand, within LU632_RS25380 at 9.409 kb on + strand, within LU632_RS25380 at 9.409 kb on + strand, within LU632_RS25380 at 9.410 kb on - strand, within LU632_RS25380 at 9.410 kb on - strand, within LU632_RS25380 at 9.410 kb on - strand, within LU632_RS25380 at 9.410 kb on - strand, within LU632_RS25380 at 9.465 kb on + strand, within LU632_RS25380 at 9.466 kb on - strand, within LU632_RS25380 at 9.466 kb on - strand, within LU632_RS25380 at 9.466 kb on - strand, within LU632_RS25380 at 9.783 kb on + strand at 9.784 kb on - strand at 9.793 kb on - strand at 9.816 kb on + strand at 9.817 kb on - strand at 9.982 kb on + strand at 9.983 kb on - strand at 9.995 kb on + strand at 9.996 kb on - strand at 9.996 kb on - strand at 9.996 kb on - strand at 9.996 kb on - strand at 9.997 kb on + strand at 9.998 kb on - strand at 9.998 kb on - strand at 9.998 kb on - strand at 10.022 kb on + strand at 10.052 kb on + strand at 10.052 kb on + strand at 10.052 kb on + strand at 10.053 kb on - strand at 10.117 kb on + strand at 10.117 kb on + strand at 10.121 kb on + strand at 10.121 kb on + strand at 10.121 kb on + strand at 10.122 kb on - strand at 10.122 kb on - strand at 10.122 kb on - strand at 10.301 kb on - strand, within LU632_RS25385 at 10.301 kb on - strand, within LU632_RS25385 at 10.352 kb on + strand, within LU632_RS25385 at 10.353 kb on - strand, within LU632_RS25385 at 10.354 kb on + strand, within LU632_RS25385 at 10.564 kb on + strand, within LU632_RS25385 at 10.565 kb on - strand, within LU632_RS25385 at 10.650 kb on + strand, within LU632_RS25385 at 10.650 kb on + strand, within LU632_RS25385 at 10.650 kb on + strand, within LU632_RS25385 at 10.651 kb on - strand, within LU632_RS25385 at 10.651 kb on - strand, within LU632_RS25385 at 10.651 kb on - strand, within LU632_RS25385 at 10.651 kb on - strand, within LU632_RS25385 at 10.651 kb on - strand, within LU632_RS25385 at 10.953 kb on + strand, within LU632_RS25385 at 10.953 kb on + strand, within LU632_RS25385 at 10.996 kb on + strand, within LU632_RS25385 at 10.997 kb on - strand, within LU632_RS25385 at 11.017 kb on - strand, within LU632_RS25385 at 11.068 kb on + strand, within LU632_RS25385 at 11.229 kb on + strand, within LU632_RS25385 at 11.229 kb on + strand, within LU632_RS25385 at 11.230 kb on - strand, within LU632_RS25385 at 11.239 kb on - strand, within LU632_RS25385 at 11.415 kb on + strand, within LU632_RS25385 at 11.415 kb on + strand, within LU632_RS25385 at 11.415 kb on + strand, within LU632_RS25385 at 11.567 kb on - strand, within LU632_RS25385 at 11.567 kb on - strand, within LU632_RS25385 at 11.567 kb on - strand, within LU632_RS25385 at 11.624 kb on + strand, within LU632_RS25385 at 11.624 kb on + strand, within LU632_RS25385 at 11.624 kb on + strand, within LU632_RS25385 at 11.730 kb on - strand, within LU632_RS25385 at 11.825 kb on + strand, within LU632_RS25385 at 11.825 kb on - strand, within LU632_RS25385 at 11.826 kb on - strand, within LU632_RS25385 at 11.833 kb on + strand, within LU632_RS25385 at 11.834 kb on - strand, within LU632_RS25385 at 11.954 kb on + strand, within LU632_RS25385 at 12.029 kb on + strand, within LU632_RS25385 at 12.029 kb on + strand, within LU632_RS25385 at 12.030 kb on - strand, within LU632_RS25385 at 12.030 kb on - strand, within LU632_RS25385 at 12.030 kb on - strand, within LU632_RS25385 at 12.030 kb on - strand, within LU632_RS25385 at 12.030 kb on - strand, within LU632_RS25385 at 12.030 kb on - strand, within LU632_RS25385 at 12.032 kb on - strand, within LU632_RS25385 at 12.065 kb on + strand, within LU632_RS25385 at 12.100 kb on + strand, within LU632_RS25385 at 12.101 kb on - strand, within LU632_RS25385 at 12.184 kb on + strand, within LU632_RS25385 at 12.184 kb on + strand, within LU632_RS25385 at 12.184 kb on + strand, within LU632_RS25385 at 12.184 kb on + strand, within LU632_RS25385 at 12.184 kb on + strand, within LU632_RS25385 at 12.184 kb on + strand, within LU632_RS25385 at 12.184 kb on + strand, within LU632_RS25385 at 12.185 kb on - strand, within LU632_RS25385 at 12.185 kb on - strand, within LU632_RS25385 at 12.185 kb on - strand, within LU632_RS25385 at 12.185 kb on - strand, within LU632_RS25385 at 12.185 kb on - strand, within LU632_RS25385 at 12.185 kb on - strand, within LU632_RS25385 at 12.185 kb on - strand, within LU632_RS25385 at 12.188 kb on + strand, within LU632_RS25385 at 12.188 kb on + strand, within LU632_RS25385 at 12.188 kb on + strand, within LU632_RS25385 at 12.188 kb on + strand, within LU632_RS25385 at 12.188 kb on + strand, within LU632_RS25385 at 12.188 kb on + strand, within LU632_RS25385 at 12.189 kb on - strand, within LU632_RS25385 at 12.189 kb on - strand, within LU632_RS25385 at 12.189 kb on - strand, within LU632_RS25385 at 12.189 kb on - strand, within LU632_RS25385 at 12.189 kb on - strand, within LU632_RS25385 at 12.249 kb on + strand, within LU632_RS25385 at 12.250 kb on - strand, within LU632_RS25385 at 12.272 kb on + strand, within LU632_RS25385 at 12.273 kb on - strand, within LU632_RS25385 at 12.376 kb on + strand, within LU632_RS25385 at 12.376 kb on + strand, within LU632_RS25385 at 12.427 kb on - strand, within LU632_RS25385 at 12.440 kb on + strand, within LU632_RS25385 at 12.440 kb on + strand, within LU632_RS25385 at 12.441 kb on - strand, within LU632_RS25385 at 12.488 kb on + strand, within LU632_RS25385 at 12.489 kb on - strand, within LU632_RS25385 at 12.517 kb on - strand, within LU632_RS25385 at 12.517 kb on - strand, within LU632_RS25385 at 12.553 kb on + strand, within LU632_RS25385 at 12.554 kb on - strand, within LU632_RS25385 at 12.554 kb on - strand, within LU632_RS25385 at 12.554 kb on - strand, within LU632_RS25385 at 12.649 kb on - strand at 12.649 kb on - strand at 12.667 kb on + strand at 12.735 kb on + strand at 12.735 kb on + strand at 12.735 kb on + strand at 12.735 kb on + strand at 12.735 kb on + strand at 12.735 kb on + strand at 12.736 kb on - strand at 12.736 kb on - strand at 12.737 kb on + strand at 12.737 kb on + strand at 12.769 kb on + strand at 12.769 kb on + strand at 12.770 kb on - strand at 12.770 kb on - strand at 12.858 kb on + strand at 12.858 kb on + strand at 12.858 kb on + strand at 12.859 kb on - strand at 12.859 kb on - strand at 12.859 kb on - strand at 12.859 kb on - strand at 12.859 kb on - strand at 12.912 kb on + strand at 12.975 kb on + strand at 12.976 kb on - strand at 13.074 kb on + strand, within traW at 13.074 kb on + strand, within traW at 13.074 kb on + strand, within traW at 13.079 kb on + strand, within traW at 13.080 kb on - strand, within traW at 13.172 kb on - strand, within traW at 13.172 kb on - strand, within traW at 13.180 kb on + strand, within traW at 13.180 kb on + strand, within traW at 13.181 kb on - strand, within traW at 13.222 kb on + strand, within traW at 13.417 kb on + strand, within traW at 13.418 kb on - strand, within traW at 13.530 kb on + strand, within traW at 13.531 kb on - strand, within traW at 13.582 kb on + strand, within traW at 13.583 kb on - strand, within traW at 13.583 kb on - strand, within traW at 13.583 kb on - strand, within traW at 13.660 kb on + strand, within traW at 13.661 kb on - strand, within traW
Per-strain Table
Position Strand Gene LocusTag Fraction Experiment:TE2, Cucumber 5 Main Stem (TE2-S-C5-MS) remove 8,842 + -0.2 8,930 + +0.7 8,972 + LU632_RS25380 0.12 -0.6 9,042 + LU632_RS25380 0.19 +1.3 9,213 - LU632_RS25380 0.37 -2.6 9,338 + LU632_RS25380 0.51 +0.8 9,404 + LU632_RS25380 0.57 +0.3 9,409 + LU632_RS25380 0.58 -1.6 9,409 + LU632_RS25380 0.58 +0.7 9,409 + LU632_RS25380 0.58 +0.8 9,410 - LU632_RS25380 0.58 +0.0 9,410 - LU632_RS25380 0.58 +0.4 9,410 - LU632_RS25380 0.58 -0.6 9,410 - LU632_RS25380 0.58 -1.6 9,465 + LU632_RS25380 0.64 -3.3 9,466 - LU632_RS25380 0.64 -1.3 9,466 - LU632_RS25380 0.64 -1.6 9,466 - LU632_RS25380 0.64 -2.5 9,783 + -2.0 9,784 - +0.0 9,793 - +0.2 9,816 + -0.5 9,817 - -1.0 9,982 + -0.2 9,983 - +0.5 9,995 + -2.8 9,996 - -1.8 9,996 - -2.0 9,996 - +1.4 9,996 - -1.6 9,997 + -1.2 9,998 - +2.9 9,998 - -1.6 9,998 - -0.2 10,022 + -2.6 10,052 + +1.0 10,052 + -0.4 10,052 + -2.0 10,053 - -2.3 10,117 + -0.6 10,117 + -3.5 10,121 + -0.7 10,121 + +0.0 10,121 + -0.3 10,122 - +1.9 10,122 - +0.5 10,122 - +1.6 10,301 - LU632_RS25385 0.15 +0.7 10,301 - LU632_RS25385 0.15 +2.1 10,352 + LU632_RS25385 0.17 +2.8 10,353 - LU632_RS25385 0.17 +0.1 10,354 + LU632_RS25385 0.17 -0.2 10,564 + LU632_RS25385 0.24 -1.3 10,565 - LU632_RS25385 0.24 -3.3 10,650 + LU632_RS25385 0.27 +0.0 10,650 + LU632_RS25385 0.27 -3.2 10,650 + LU632_RS25385 0.27 +1.1 10,651 - LU632_RS25385 0.27 +0.0 10,651 - LU632_RS25385 0.27 +2.0 10,651 - LU632_RS25385 0.27 -1.6 10,651 - LU632_RS25385 0.27 +0.0 10,651 - LU632_RS25385 0.27 +0.5 10,953 + LU632_RS25385 0.36 -0.2 10,953 + LU632_RS25385 0.36 +0.9 10,996 + LU632_RS25385 0.38 -0.1 10,997 - LU632_RS25385 0.38 -3.2 11,017 - LU632_RS25385 0.38 +0.9 11,068 + LU632_RS25385 0.40 +0.7 11,229 + LU632_RS25385 0.45 -0.8 11,229 + LU632_RS25385 0.45 -1.3 11,230 - LU632_RS25385 0.45 +1.0 11,239 - LU632_RS25385 0.46 +0.4 11,415 + LU632_RS25385 0.51 -1.6 11,415 + LU632_RS25385 0.51 -1.7 11,415 + LU632_RS25385 0.51 -2.8 11,567 - LU632_RS25385 0.56 -1.1 11,567 - LU632_RS25385 0.56 -1.5 11,567 - LU632_RS25385 0.56 +2.5 11,624 + LU632_RS25385 0.58 -1.3 11,624 + LU632_RS25385 0.58 +0.5 11,624 + LU632_RS25385 0.58 +1.8 11,730 - LU632_RS25385 0.62 +1.2 11,825 + LU632_RS25385 0.65 -0.3 11,825 - LU632_RS25385 0.65 -1.0 11,826 - LU632_RS25385 0.65 -1.2 11,833 + LU632_RS25385 0.65 -0.6 11,834 - LU632_RS25385 0.65 -1.1 11,954 + LU632_RS25385 0.69 +0.5 12,029 + LU632_RS25385 0.71 +0.5 12,029 + LU632_RS25385 0.71 -4.1 12,030 - LU632_RS25385 0.71 +0.3 12,030 - LU632_RS25385 0.71 -1.6 12,030 - LU632_RS25385 0.71 +1.2 12,030 - LU632_RS25385 0.71 -0.6 12,030 - LU632_RS25385 0.71 -1.3 12,030 - LU632_RS25385 0.71 -0.3 12,032 - LU632_RS25385 0.71 -0.9 12,065 + LU632_RS25385 0.73 +1.2 12,100 + LU632_RS25385 0.74 -2.3 12,101 - LU632_RS25385 0.74 -2.5 12,184 + LU632_RS25385 0.76 -1.3 12,184 + LU632_RS25385 0.76 +1.9 12,184 + LU632_RS25385 0.76 -0.5 12,184 + LU632_RS25385 0.76 +1.1 12,184 + LU632_RS25385 0.76 -1.6 12,184 + LU632_RS25385 0.76 -3.6 12,184 + LU632_RS25385 0.76 -4.5 12,185 - LU632_RS25385 0.76 -0.9 12,185 - LU632_RS25385 0.76 -1.1 12,185 - LU632_RS25385 0.76 -2.0 12,185 - LU632_RS25385 0.76 +1.4 12,185 - LU632_RS25385 0.76 -0.7 12,185 - LU632_RS25385 0.76 +1.1 12,185 - LU632_RS25385 0.76 +1.6 12,188 + LU632_RS25385 0.77 -2.4 12,188 + LU632_RS25385 0.77 +0.8 12,188 + LU632_RS25385 0.77 -0.4 12,188 + LU632_RS25385 0.77 -4.0 12,188 + LU632_RS25385 0.77 +1.1 12,188 + LU632_RS25385 0.77 -3.3 12,189 - LU632_RS25385 0.77 +0.5 12,189 - LU632_RS25385 0.77 -1.7 12,189 - LU632_RS25385 0.77 -0.3 12,189 - LU632_RS25385 0.77 -1.1 12,189 - LU632_RS25385 0.77 +0.4 12,249 + LU632_RS25385 0.78 +4.6 12,250 - LU632_RS25385 0.79 +0.2 12,272 + LU632_RS25385 0.79 -1.6 12,273 - LU632_RS25385 0.79 +3.6 12,376 + LU632_RS25385 0.83 +1.7 12,376 + LU632_RS25385 0.83 -2.3 12,427 - LU632_RS25385 0.84 +0.2 12,440 + LU632_RS25385 0.85 +1.4 12,440 + LU632_RS25385 0.85 +0.7 12,441 - LU632_RS25385 0.85 -2.3 12,488 + LU632_RS25385 0.86 -2.0 12,489 - LU632_RS25385 0.86 -1.5 12,517 - LU632_RS25385 0.87 -1.0 12,517 - LU632_RS25385 0.87 +1.0 12,553 + LU632_RS25385 0.88 -0.5 12,554 - LU632_RS25385 0.88 -2.6 12,554 - LU632_RS25385 0.88 -0.3 12,554 - LU632_RS25385 0.88 +0.5 12,649 - -0.4 12,649 - -2.6 12,667 + +0.0 12,735 + +0.6 12,735 + -3.5 12,735 + +0.0 12,735 + -2.6 12,735 + +0.1 12,735 + +1.0 12,736 - +1.2 12,736 - +2.4 12,737 + -0.9 12,737 + -1.6 12,769 + -0.3 12,769 + +2.5 12,770 - +1.2 12,770 - -2.0 12,858 + -0.6 12,858 + -0.3 12,858 + +0.6 12,859 - -0.2 12,859 - +0.9 12,859 - +1.2 12,859 - -2.2 12,859 - -2.0 12,912 + -1.6 12,975 + -0.7 12,976 - -3.0 13,074 + traW LU632_RS25390 0.12 +0.5 13,074 + traW LU632_RS25390 0.12 +0.5 13,074 + traW LU632_RS25390 0.12 -1.4 13,079 + traW LU632_RS25390 0.13 -0.4 13,080 - traW LU632_RS25390 0.13 +0.0 13,172 - traW LU632_RS25390 0.21 +0.6 13,172 - traW LU632_RS25390 0.21 -1.7 13,180 + traW LU632_RS25390 0.21 -1.0 13,180 + traW LU632_RS25390 0.21 +0.2 13,181 - traW LU632_RS25390 0.21 -1.6 13,222 + traW LU632_RS25390 0.25 -0.7 13,417 + traW LU632_RS25390 0.41 -4.0 13,418 - traW LU632_RS25390 0.41 +2.3 13,530 + traW LU632_RS25390 0.51 -0.0 13,531 - traW LU632_RS25390 0.51 -2.3 13,582 + traW LU632_RS25390 0.55 +1.0 13,583 - traW LU632_RS25390 0.55 -1.6 13,583 - traW LU632_RS25390 0.55 +0.7 13,583 - traW LU632_RS25390 0.55 +2.7 13,660 + traW LU632_RS25390 0.61 -2.0 13,661 - traW LU632_RS25390 0.61 +0.3
Or see this region's nucleotide sequence