Experiment: Experiment:TE2, Cucumber 5 Main Stem (TE2-S-C5-MS)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LU632_RS25365 and traQ overlap by 1 nucleotides traQ and LU632_RS25375 are separated by 26 nucleotides LU632_RS25375 and LU632_RS25380 are separated by 51 nucleotides
LU632_RS25365: LU632_RS25365 - hypothetical protein, at 7,073 to 7,867
_RS25365
LU632_RS25370: traQ - conjugal transfer protein TraQ, at 7,867 to 8,394
traQ
LU632_RS25375: LU632_RS25375 - hypothetical protein, at 8,421 to 8,804
_RS25375
LU632_RS25380: LU632_RS25380 - hypothetical protein, at 8,856 to 9,809
_RS25380
Position (kb) 8
9 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 7.495 kb on - strand, within LU632_RS25365 at 7.612 kb on - strand, within LU632_RS25365 at 7.695 kb on + strand, within LU632_RS25365 at 7.695 kb on + strand, within LU632_RS25365 at 7.695 kb on + strand, within LU632_RS25365 at 7.696 kb on - strand, within LU632_RS25365 at 7.714 kb on + strand, within LU632_RS25365 at 7.714 kb on + strand, within LU632_RS25365 at 7.714 kb on + strand, within LU632_RS25365 at 7.714 kb on + strand, within LU632_RS25365 at 7.714 kb on + strand, within LU632_RS25365 at 7.715 kb on - strand, within LU632_RS25365 at 7.715 kb on - strand, within LU632_RS25365 at 7.715 kb on - strand, within LU632_RS25365 at 7.715 kb on - strand, within LU632_RS25365 at 7.932 kb on - strand, within traQ at 8.010 kb on + strand, within traQ at 8.089 kb on - strand, within traQ at 8.140 kb on + strand, within traQ at 8.141 kb on - strand, within traQ at 8.234 kb on + strand, within traQ at 8.234 kb on + strand, within traQ at 8.234 kb on + strand, within traQ at 8.235 kb on - strand, within traQ at 8.235 kb on - strand, within traQ at 8.235 kb on - strand, within traQ at 8.392 kb on + strand at 8.400 kb on + strand at 8.643 kb on - strand, within LU632_RS25375 at 8.645 kb on + strand, within LU632_RS25375 at 8.654 kb on - strand, within LU632_RS25375 at 8.842 kb on + strand at 8.930 kb on + strand at 8.972 kb on + strand, within LU632_RS25380 at 9.042 kb on + strand, within LU632_RS25380 at 9.213 kb on - strand, within LU632_RS25380 at 9.338 kb on + strand, within LU632_RS25380 at 9.404 kb on + strand, within LU632_RS25380 at 9.409 kb on + strand, within LU632_RS25380 at 9.409 kb on + strand, within LU632_RS25380 at 9.409 kb on + strand, within LU632_RS25380 at 9.410 kb on - strand, within LU632_RS25380 at 9.410 kb on - strand, within LU632_RS25380 at 9.410 kb on - strand, within LU632_RS25380 at 9.410 kb on - strand, within LU632_RS25380 at 9.465 kb on + strand, within LU632_RS25380 at 9.466 kb on - strand, within LU632_RS25380 at 9.466 kb on - strand, within LU632_RS25380 at 9.466 kb on - strand, within LU632_RS25380 at 9.783 kb on + strand at 9.784 kb on - strand at 9.793 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Experiment:TE2, Cucumber 5 Main Stem (TE2-S-C5-MS) remove 7,495 - LU632_RS25365 0.53 -3.2 7,612 - LU632_RS25365 0.68 -0.6 7,695 + LU632_RS25365 0.78 -0.1 7,695 + LU632_RS25365 0.78 +0.4 7,695 + LU632_RS25365 0.78 +0.7 7,696 - LU632_RS25365 0.78 +0.0 7,714 + LU632_RS25365 0.81 +0.0 7,714 + LU632_RS25365 0.81 -0.7 7,714 + LU632_RS25365 0.81 +2.2 7,714 + LU632_RS25365 0.81 -0.5 7,714 + LU632_RS25365 0.81 -2.1 7,715 - LU632_RS25365 0.81 +0.9 7,715 - LU632_RS25365 0.81 -0.0 7,715 - LU632_RS25365 0.81 -2.5 7,715 - LU632_RS25365 0.81 +2.2 7,932 - traQ LU632_RS25370 0.12 +1.3 8,010 + traQ LU632_RS25370 0.27 +0.7 8,089 - traQ LU632_RS25370 0.42 +0.0 8,140 + traQ LU632_RS25370 0.52 -1.7 8,141 - traQ LU632_RS25370 0.52 +0.7 8,234 + traQ LU632_RS25370 0.70 +0.5 8,234 + traQ LU632_RS25370 0.70 +1.6 8,234 + traQ LU632_RS25370 0.70 +1.0 8,235 - traQ LU632_RS25370 0.70 -2.6 8,235 - traQ LU632_RS25370 0.70 -2.8 8,235 - traQ LU632_RS25370 0.70 +0.0 8,392 + -1.4 8,400 + +0.5 8,643 - LU632_RS25375 0.58 +0.1 8,645 + LU632_RS25375 0.58 -2.0 8,654 - LU632_RS25375 0.61 -0.4 8,842 + -0.2 8,930 + +0.7 8,972 + LU632_RS25380 0.12 -0.6 9,042 + LU632_RS25380 0.19 +1.3 9,213 - LU632_RS25380 0.37 -2.6 9,338 + LU632_RS25380 0.51 +0.8 9,404 + LU632_RS25380 0.57 +0.3 9,409 + LU632_RS25380 0.58 -1.6 9,409 + LU632_RS25380 0.58 +0.7 9,409 + LU632_RS25380 0.58 +0.8 9,410 - LU632_RS25380 0.58 +0.0 9,410 - LU632_RS25380 0.58 +0.4 9,410 - LU632_RS25380 0.58 -0.6 9,410 - LU632_RS25380 0.58 -1.6 9,465 + LU632_RS25380 0.64 -3.3 9,466 - LU632_RS25380 0.64 -1.3 9,466 - LU632_RS25380 0.64 -1.6 9,466 - LU632_RS25380 0.64 -2.5 9,783 + -2.0 9,784 - +0.0 9,793 - +0.2
Or see this region's nucleotide sequence