Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS25060

Experiment: Experiment:TE2, Cucumber 5 Main Stem (TE2-S-C5-MS)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Experiment:TE2, Cucumber 5 Main Stem (TE2-S-C5-MS)
4,772,533	+		LU632_RS25045	0.58	-0.8
4,772,588	-		LU632_RS25045	0.71	-0.6
4,772,593	+		LU632_RS25045	0.72	-3.3
4,772,617	+		LU632_RS25045	0.77	-0.1
4,772,618	-		LU632_RS25045	0.77	-2.6
4,772,618	-		LU632_RS25045	0.77	+0.5
4,772,714	-				-1.6
4,772,753	+				+0.8
4,772,766	+				+0.2
4,772,770	+				-0.2
4,772,856	-		LU632_RS25050	0.16	-0.3
4,772,930	-		LU632_RS25050	0.34	+0.9
4,772,930	-		LU632_RS25050	0.34	+1.6
4,772,997	+		LU632_RS25050	0.50	+0.9
4,772,997	+		LU632_RS25050	0.50	-2.3
4,772,997	+		LU632_RS25050	0.50	+0.7
4,772,997	+		LU632_RS25050	0.50	-2.7
4,772,997	+		LU632_RS25050	0.50	-1.7
4,772,999	+		LU632_RS25050	0.50	-0.4
4,773,000	-		LU632_RS25050	0.51	-1.1
4,773,016	-		LU632_RS25050	0.55	+1.0
4,773,016	-		LU632_RS25050	0.55	+0.1
4,773,019	-		LU632_RS25050	0.55	+0.1
4,773,019	-		LU632_RS25050	0.55	-1.1
4,773,065	+		LU632_RS25050	0.66	+0.9
4,773,066	-		LU632_RS25050	0.66	-0.7
4,773,143	+		LU632_RS25050	0.85	+0.9
4,773,143	+		LU632_RS25050	0.85	-2.7
4,773,146	+		LU632_RS25050	0.85	+0.7
4,773,204	+				-0.4
4,773,205	-				-3.4
4,773,495	+				+0.7
4,773,496	-				-0.2
4,773,496	-				+0.2
4,773,498	+				-2.3
4,773,590	+		LU632_RS25060	0.31	-1.1
4,773,590	+		LU632_RS25060	0.31	-2.0
4,773,591	-		LU632_RS25060	0.31	-1.9
4,773,666	+		LU632_RS25060	0.49	+1.5
4,773,667	-		LU632_RS25060	0.49	-4.1
4,773,675	-		LU632_RS25060	0.51	+0.9
4,773,719	+		LU632_RS25060	0.61	-1.7
4,773,881	+				-2.3
4,773,881	+				-1.5
4,773,881	+				-0.1
4,773,881	+				+0.9
4,773,882	-				-2.1
4,773,882	-				-2.3
4,773,882	-				+2.3
4,773,885	+				-2.3
4,773,886	-				-1.4
4,773,905	-				+0.2
4,774,055	+		LU632_RS25065	0.47	+0.6
4,774,055	+		LU632_RS25065	0.47	-1.5
4,774,056	-		LU632_RS25065	0.47	-1.7
4,774,062	-		LU632_RS25065	0.49	-0.1
4,774,065	+		LU632_RS25065	0.49	+3.3
4,774,066	-		LU632_RS25065	0.50	+0.4
4,774,141	-		LU632_RS25065	0.69	+0.8
4,774,245	+				-0.1
4,774,367	-				-4.1
4,774,402	-				-0.8
4,774,482	+		LU632_RS25070	0.32	-2.6
4,774,483	-		LU632_RS25070	0.32	-0.2
4,774,537	+		LU632_RS25070	0.60	+0.9
4,774,537	+		LU632_RS25070	0.60	+0.9
4,774,537	+		LU632_RS25070	0.60	+0.7
4,774,537	+		LU632_RS25070	0.60	+0.9
4,774,614	+				+0.9
4,774,629	+				+0.8
4,774,633	-				+1.2
4,774,633	-				-1.1
4,774,633	-				-3.2
4,774,790	+		LU632_RS25075	0.58	-1.7
4,774,790	+		LU632_RS25075	0.58	+1.4
4,774,791	-		LU632_RS25075	0.58	-2.9
4,774,791	-		LU632_RS25075	0.58	-1.7
4,774,791	-		LU632_RS25075	0.58	-1.9