Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS24845

Experiment: Experiment:TE2, Cucumber 5 Main Stem (TE2-S-C5-MS)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Experiment:TE2, Cucumber 5 Main Stem (TE2-S-C5-MS)
4,736,116	+	kup	LU632_RS24840	0.77	-2.1
4,736,116	+	kup	LU632_RS24840	0.77	-0.1
4,736,116	+	kup	LU632_RS24840	0.77	-5.7
4,736,117	-	kup	LU632_RS24840	0.77	-1.7
4,736,117	-	kup	LU632_RS24840	0.77	-1.1
4,736,118	+	kup	LU632_RS24840	0.77	-0.7
4,736,118	+	kup	LU632_RS24840	0.77	-3.3
4,736,118	+	kup	LU632_RS24840	0.77	-3.5
4,736,119	-	kup	LU632_RS24840	0.77	-2.4
4,736,119	-	kup	LU632_RS24840	0.77	-1.4
4,736,119	-	kup	LU632_RS24840	0.77	-2.1
4,736,119	-	kup	LU632_RS24840	0.77	-2.7
4,736,119	-	kup	LU632_RS24840	0.77	-1.7
4,736,119	-	kup	LU632_RS24840	0.77	-2.5
4,736,119	-	kup	LU632_RS24840	0.77	+2.5
4,736,230	+	kup	LU632_RS24840	0.83	-0.1
4,736,230	+	kup	LU632_RS24840	0.83	-3.8
4,736,230	+	kup	LU632_RS24840	0.83	-1.7
4,736,231	-	kup	LU632_RS24840	0.83	-0.7
4,736,299	+	kup	LU632_RS24840	0.87	-2.6
4,736,333	+	kup	LU632_RS24840	0.88	-1.7
4,736,334	-	kup	LU632_RS24840	0.88	-1.7
4,736,391	+				-3.2
4,736,432	-				-1.0
4,736,522	+				-1.1
4,736,522	+				-3.5
4,736,783	-				-0.6
4,736,799	-				-0.3
4,736,799	-				-0.1
4,736,802	-				+3.4
4,736,895	-				-0.6
4,736,910	+				-3.1
4,736,911	-				-1.7
4,737,040	-		LU632_RS24845	0.44	+1.2
4,737,275	-		LU632_RS24850	0.19	-1.7
4,737,275	-		LU632_RS24850	0.19	+0.6
4,737,275	-		LU632_RS24850	0.19	+3.2
4,737,275	-		LU632_RS24850	0.19	-1.3
4,737,275	-		LU632_RS24850	0.19	+2.5
4,737,275	-		LU632_RS24850	0.19	-0.2
4,737,391	+		LU632_RS24850	0.39	-1.9
4,737,448	-		LU632_RS24850	0.49	+0.7
4,737,448	-		LU632_RS24850	0.49	+0.2
4,737,453	-		LU632_RS24850	0.50	-2.5
4,737,533	+		LU632_RS24850	0.64	+2.1
4,737,681	-				-1.0
4,737,923	-				-2.8
4,737,923	-				+0.6
4,738,090	+				-0.1
4,738,092	+				+1.0
4,738,092	+				-0.3
4,738,094	+				+0.1
4,738,094	+				+1.4
4,738,095	-				+0.9
4,738,095	-				+1.2
4,738,095	-				+1.5
4,738,095	-				+1.3
4,738,095	-				-0.7
4,738,095	-				-0.7
4,738,095	-				-0.3
4,738,111	-				-3.6
4,738,111	-				-3.0
4,738,134	+				+0.3