Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS24835

Experiment: Experiment:TE2, Cucumber 5 Main Stem (TE2-S-C5-MS)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Experiment:TE2, Cucumber 5 Main Stem (TE2-S-C5-MS)
4,731,952	+	viaA	LU632_RS24830	0.33	-0.9
4,731,953	-	viaA	LU632_RS24830	0.33	-3.0
4,732,041	+	viaA	LU632_RS24830	0.39	+0.1
4,732,042	-	viaA	LU632_RS24830	0.39	+0.4
4,732,346	+	viaA	LU632_RS24830	0.60	+0.8
4,732,535	+	viaA	LU632_RS24830	0.73	-0.2
4,732,582	+	viaA	LU632_RS24830	0.76	-0.5
4,732,582	+	viaA	LU632_RS24830	0.76	+0.9
4,732,638	+	viaA	LU632_RS24830	0.80	+1.4
4,732,661	+	viaA	LU632_RS24830	0.82	+0.2
4,732,661	+	viaA	LU632_RS24830	0.82	-0.4
4,732,910	+				-1.7
4,732,910	+				-4.6
4,732,911	-				+1.2
4,733,178	+	ravA	LU632_RS24835	0.17	-0.2
4,733,184	+	ravA	LU632_RS24835	0.17	-0.6
4,733,185	-	ravA	LU632_RS24835	0.17	-0.4
4,733,233	+	ravA	LU632_RS24835	0.20	-2.8
4,733,234	-	ravA	LU632_RS24835	0.21	+0.5
4,733,302	-	ravA	LU632_RS24835	0.25	+4.4
4,733,302	-	ravA	LU632_RS24835	0.25	-0.9
4,733,302	-	ravA	LU632_RS24835	0.25	+1.6
4,733,560	+	ravA	LU632_RS24835	0.42	-1.4
4,733,560	+	ravA	LU632_RS24835	0.42	+3.2
4,733,560	+	ravA	LU632_RS24835	0.42	-0.9
4,733,560	+	ravA	LU632_RS24835	0.42	-0.8
4,733,560	+	ravA	LU632_RS24835	0.42	+1.2
4,733,560	+	ravA	LU632_RS24835	0.42	-2.3
4,733,560	+	ravA	LU632_RS24835	0.42	+4.3
4,733,561	-	ravA	LU632_RS24835	0.42	-1.8
4,733,561	-	ravA	LU632_RS24835	0.42	-0.3
4,733,561	-	ravA	LU632_RS24835	0.42	-3.5
4,733,628	-	ravA	LU632_RS24835	0.47	-0.1
4,733,682	+	ravA	LU632_RS24835	0.51	-1.4
4,733,684	+	ravA	LU632_RS24835	0.51	+0.9
4,733,789	+	ravA	LU632_RS24835	0.58	+1.6
4,733,805	+	ravA	LU632_RS24835	0.59	+3.7
4,734,027	+	ravA	LU632_RS24835	0.74	-2.3
4,734,027	+	ravA	LU632_RS24835	0.74	+0.5
4,734,028	-	ravA	LU632_RS24835	0.74	-1.9
4,734,031	-	ravA	LU632_RS24835	0.74	-0.3
4,734,054	+	ravA	LU632_RS24835	0.75	-0.3
4,734,074	-	ravA	LU632_RS24835	0.77	-0.3
4,734,209	+	ravA	LU632_RS24835	0.86	+0.2
4,734,210	-	ravA	LU632_RS24835	0.86	-0.0
4,734,367	+				-0.4
4,734,466	-				-2.1
4,734,492	+				+2.8
4,734,579	+				+1.3
4,734,585	+				+2.6
4,734,585	+				+0.7
4,734,589	+				-3.3
4,734,589	+				+0.6
4,734,590	-				-2.3
4,734,590	-				-2.1
4,734,609	+				-1.1
4,734,609	+				+0.3
4,734,609	+				+0.2
4,734,609	+				+2.4
4,734,676	+				+3.6
4,734,676	+				-1.4
4,734,676	+				-0.5
4,734,681	+				-3.6
4,734,742	+				-1.4
4,734,769	+				-0.8
4,734,769	+				-1.9
4,734,771	+				-2.7
4,734,828	-				-0.7
4,734,883	+	kup	LU632_RS24840	0.11	-4.1
4,734,883	+	kup	LU632_RS24840	0.11	-2.3
4,734,883	+	kup	LU632_RS24840	0.11	-1.5
4,734,884	-	kup	LU632_RS24840	0.11	-2.7
4,734,892	+	kup	LU632_RS24840	0.11	-1.4
4,735,105	+	kup	LU632_RS24840	0.23	-3.7
4,735,107	+	kup	LU632_RS24840	0.23	-0.8
4,735,309	+	kup	LU632_RS24840	0.34	-1.7
4,735,375	+	kup	LU632_RS24840	0.37	-0.7
4,735,375	+	kup	LU632_RS24840	0.37	-0.7