Experiment: Experiment:TE2, Cucumber 5 Main Stem (TE2-S-C5-MS)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LU632_RS24825 and viaA are separated by 199 nucleotides viaA and ravA overlap by 4 nucleotides
LU632_RS24825: LU632_RS24825 - IS91 family transposase, at 4,730,044 to 4,731,267
_RS24825
LU632_RS24830: viaA - ATPase RavA stimulator ViaA, at 4,731,467 to 4,732,930
viaA
LU632_RS24835: ravA - ATPase RavA, at 4,732,927 to 4,734,420
ravA
Position (kb) 4731
4732
4733 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4 at 4731.418 kb on + strand at 4731.418 kb on + strand at 4731.419 kb on - strand at 4731.422 kb on + strand at 4731.423 kb on - strand at 4731.430 kb on + strand at 4731.430 kb on + strand at 4731.431 kb on - strand at 4731.437 kb on + strand at 4731.523 kb on + strand at 4731.541 kb on + strand at 4731.541 kb on + strand at 4731.616 kb on + strand, within viaA at 4731.664 kb on + strand, within viaA at 4731.664 kb on + strand, within viaA at 4731.669 kb on - strand, within viaA at 4731.811 kb on - strand, within viaA at 4731.811 kb on - strand, within viaA at 4731.952 kb on + strand, within viaA at 4731.953 kb on - strand, within viaA at 4732.041 kb on + strand, within viaA at 4732.042 kb on - strand, within viaA at 4732.346 kb on + strand, within viaA at 4732.535 kb on + strand, within viaA at 4732.582 kb on + strand, within viaA at 4732.582 kb on + strand, within viaA at 4732.638 kb on + strand, within viaA at 4732.661 kb on + strand, within viaA at 4732.661 kb on + strand, within viaA at 4732.910 kb on + strand at 4732.910 kb on + strand at 4732.911 kb on - strand at 4733.178 kb on + strand, within ravA at 4733.184 kb on + strand, within ravA at 4733.185 kb on - strand, within ravA at 4733.233 kb on + strand, within ravA at 4733.234 kb on - strand, within ravA at 4733.302 kb on - strand, within ravA at 4733.302 kb on - strand, within ravA at 4733.302 kb on - strand, within ravA at 4733.560 kb on + strand, within ravA at 4733.560 kb on + strand, within ravA at 4733.560 kb on + strand, within ravA at 4733.560 kb on + strand, within ravA at 4733.560 kb on + strand, within ravA at 4733.560 kb on + strand, within ravA at 4733.560 kb on + strand, within ravA at 4733.561 kb on - strand, within ravA at 4733.561 kb on - strand, within ravA at 4733.561 kb on - strand, within ravA at 4733.628 kb on - strand, within ravA at 4733.682 kb on + strand, within ravA at 4733.684 kb on + strand, within ravA at 4733.789 kb on + strand, within ravA at 4733.805 kb on + strand, within ravA
Per-strain Table
Position Strand Gene LocusTag Fraction Experiment:TE2, Cucumber 5 Main Stem (TE2-S-C5-MS) remove 4,731,418 + +0.0 4,731,418 + -1.5 4,731,419 - -1.7 4,731,422 + -0.8 4,731,423 - +0.7 4,731,430 + -1.0 4,731,430 + -1.9 4,731,431 - +0.8 4,731,437 + -1.7 4,731,523 + +0.7 4,731,541 + -1.6 4,731,541 + +0.9 4,731,616 + viaA LU632_RS24830 0.10 -2.7 4,731,664 + viaA LU632_RS24830 0.13 +1.9 4,731,664 + viaA LU632_RS24830 0.13 -0.3 4,731,669 - viaA LU632_RS24830 0.14 +0.3 4,731,811 - viaA LU632_RS24830 0.23 -0.9 4,731,811 - viaA LU632_RS24830 0.23 -0.1 4,731,952 + viaA LU632_RS24830 0.33 -0.9 4,731,953 - viaA LU632_RS24830 0.33 -3.0 4,732,041 + viaA LU632_RS24830 0.39 +0.1 4,732,042 - viaA LU632_RS24830 0.39 +0.4 4,732,346 + viaA LU632_RS24830 0.60 +0.8 4,732,535 + viaA LU632_RS24830 0.73 -0.2 4,732,582 + viaA LU632_RS24830 0.76 -0.5 4,732,582 + viaA LU632_RS24830 0.76 +0.9 4,732,638 + viaA LU632_RS24830 0.80 +1.4 4,732,661 + viaA LU632_RS24830 0.82 +0.2 4,732,661 + viaA LU632_RS24830 0.82 -0.4 4,732,910 + -1.7 4,732,910 + -4.6 4,732,911 - +1.2 4,733,178 + ravA LU632_RS24835 0.17 -0.2 4,733,184 + ravA LU632_RS24835 0.17 -0.6 4,733,185 - ravA LU632_RS24835 0.17 -0.4 4,733,233 + ravA LU632_RS24835 0.20 -2.8 4,733,234 - ravA LU632_RS24835 0.21 +0.5 4,733,302 - ravA LU632_RS24835 0.25 +4.4 4,733,302 - ravA LU632_RS24835 0.25 -0.9 4,733,302 - ravA LU632_RS24835 0.25 +1.6 4,733,560 + ravA LU632_RS24835 0.42 -1.4 4,733,560 + ravA LU632_RS24835 0.42 +3.2 4,733,560 + ravA LU632_RS24835 0.42 -0.9 4,733,560 + ravA LU632_RS24835 0.42 -0.8 4,733,560 + ravA LU632_RS24835 0.42 +1.2 4,733,560 + ravA LU632_RS24835 0.42 -2.3 4,733,560 + ravA LU632_RS24835 0.42 +4.3 4,733,561 - ravA LU632_RS24835 0.42 -1.8 4,733,561 - ravA LU632_RS24835 0.42 -0.3 4,733,561 - ravA LU632_RS24835 0.42 -3.5 4,733,628 - ravA LU632_RS24835 0.47 -0.1 4,733,682 + ravA LU632_RS24835 0.51 -1.4 4,733,684 + ravA LU632_RS24835 0.51 +0.9 4,733,789 + ravA LU632_RS24835 0.58 +1.6 4,733,805 + ravA LU632_RS24835 0.59 +3.7
Or see this region's nucleotide sequence